PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G28000.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 474aa    MW: 51849.3 Da    PI: 8.4211
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G28000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.12.9e-21318372455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 
                      lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v gLt +++kSHLQkYR 
  OBART03G28000.2 318 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTGLTTHNIKSHLQKYRE 372
                      89************************777222667889****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517355.91E-3275236IPR016040NAD(P)-binding domain
PRINTSPR000814.8E-147592IPR002347Short-chain dehydrogenase/reductase SDR
CDDcd052331.85E-3176251No hitNo description
Gene3DG3DSA:3.40.50.7201.2E-2176158IPR016040NAD(P)-binding domain
PfamPF001061.4E-1776155IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7202.1E-12159250IPR016040NAD(P)-binding domain
PfamPF001061.2E-8159232IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610176204IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000814.8E-14189208IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000814.8E-14213230IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466892.87E-12312374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-19314373IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-16318372IPR006447Myb domain, plants
PfamPF002498.9E-6319371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAATAAYLPL RAQAQVGLAP LRPSGSAAAG ARLPGRTARR RLAARGGPEA AGIRAEAVPG  60
GGGVARRAAM VPPYNVLITG STKGIGYALA KEFLKAGDNV VICSRSAERV ESAVTDLKKE  120
FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWAINM MRNQPRGGHI FNIDGAGSDG  180
RPTPRFAAYG ATKRSVVHLT KSLQAELQMN EVNNVMVHNL SPGMVTTDLL MSGATTKQVA  240
DYLVPNIRAI PTNQSMKPTY IRFLTGLKAY SRIFSRIAFG ARRNKIMSNS QPAQEDDCMS  300
SILVSRLIRA MQPTRSYLRW SDDLHKMFVE AVAYHGGPYE AKPTAVKETM QAMGVTGLTT  360
HNIKSHLQKY RESFSSGVGS LHDHDLLRTT SPSKEALDLA SEMVRDNDAA MAEIEMLNDL  420
LLDHDIEMME RELMSEIKLI EHTFEISESA LDEYMDDLAN YAFDLTGPAN SSSP
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2550260.0AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds.
GenBankAK2878690.0AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628274.10.0chlorophyll(ide) b reductase NOL, chloroplastic isoform X2
SwissprotQ84ST40.0NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLA0A0D3FLY50.0A0A0D3FLY5_9ORYZ; Uncharacterized protein
STRINGOBART03G28000.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-13G2-like family protein
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]