PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G27560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 189aa MW: 20267.9 Da PI: 10.1861 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 45 | 3.6e-14 | 148 | 182 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rk OBART03G27560.1 148 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRK 182 68****************************.88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 18.617 | 147 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-11 | 150 | 182 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA 60 ALDPAAPEPE KTAVPAMPKR GGGAPEVLKF SVFSGNLEPG DTGEKNREHS ATIAMQSPLP 120 EYNGHFELGL GQSMSGGRML LPLNAPADAP IYVNAKQYEG ILRRRRARAK AQRENRLVKG 180 RKVRTPASF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288034 | 0.0 | AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK106398 | 0.0 | AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880121.1 | 4e-95 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_025880122.1 | 4e-95 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | A0A0D3FLT0 | 1e-134 | A0A0D3FLT0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G27560.1 | 1e-134 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |