PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G27030.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 808aa MW: 89058.1 Da PI: 7.2637

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G27030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	28.9	2.3e-09	564	590	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ OBART03G27030.1 564 KSYCECFASKVYCSESCSCRGCFNDHS 590 99**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	11.582	556	640	IPR005172	CRC domain
SMART	SM01114	1.1E-4	557	591	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.0E-6	564	588	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MSIKICRGEY DANITRYEVV WSRRVLAAKD GTIWACLFVV DREGQWLRSE TNKEGTRGGG 60 RFEVVATTCE VTVVVGCMKE MLAGQFYCKG EERVDGGASV KRRGAPQRKG VGGETDSPFL 120 NFVKSLSPIS SSQPLDAVPN LQMIKSSDLV HIPSIFTSPE FTHFGLMNTS AKPCQDGLSP 180 YCHMTQIGRS SCIKQSGPMT IASKNCSIDR SLSQAYHDSP DNASILPTNL ARRIQLSSDT 240 LGSDKRHGIA GKTDHETAQK HAKLSCFDQR CLDKMKQLTS GMNVQKRDLA KTHNDEITAC 300 DWDYLGTQYD SSVVPESDLR FETAELLLET PKNGDAMPGK SFLPIVEANL ENSRRKLFQG 360 SADCYSQSAV DNIHAYCTSR GKEVATNHVS GILPCPRESQ LIPDHHFSDS LEVPSDYMAM 420 NPSAVSQHLR GLHRRSLFND KVRDPTMGVQ SVSNLGASTC ATRHRSIPDD NYSKLVGSPV 480 CALPNVDLHL VRMTEEMVPY NMTCTVNSTL SISEHNTEIN TVVPVNQLAP NTSEMNTHNQ 540 DNYSSQATMP TSAGNSGQEN PKRKSYCECF ASKVYCSESC SCRGCFNDHS HEETVLSTRN 600 RIESRSPLAF APKVIRTCGP GLEFGEDSNA TPASSCHKRG IERFETKEIE RADRKMKDHP 660 KEEQSEMDKY HALCEIWGVR STENLFTTPS MDSRRAFALF PSECPKSSLT SSTRTSSHLH 720 SPTRTDVLLS PFGSYTQMLL GNEASDMLLQ QGDSSCTASL RIASPNKKRV SPLRTGNTLS 780 PTCRKELGLK SIIPPFPSLT GDANSELQ

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MSIKICRGEY DANITRYEVV WSRRVLAAKD GTIWACLFVV DREGQWLRSE TNKEGTRGGG  60
RFEVVATTCE VTVVVGCMKE MLAGQFYCKG EERVDGGASV KRRGAPQRKG VGGETDSPFL  120
NFVKSLSPIS SSQPLDAVPN LQMIKSSDLV HIPSIFTSPE FTHFGLMNTS AKPCQDGLSP  180
YCHMTQIGRS SCIKQSGPMT IASKNCSIDR SLSQAYHDSP DNASILPTNL ARRIQLSSDT  240
LGSDKRHGIA GKTDHETAQK HAKLSCFDQR CLDKMKQLTS GMNVQKRDLA KTHNDEITAC  300
DWDYLGTQYD SSVVPESDLR FETAELLLET PKNGDAMPGK SFLPIVEANL ENSRRKLFQG  360
SADCYSQSAV DNIHAYCTSR GKEVATNHVS GILPCPRESQ LIPDHHFSDS LEVPSDYMAM  420
NPSAVSQHLR GLHRRSLFND KVRDPTMGVQ SVSNLGASTC ATRHRSIPDD NYSKLVGSPV  480
CALPNVDLHL VRMTEEMVPY NMTCTVNSTL SISEHNTEIN TVVPVNQLAP NTSEMNTHNQ  540
DNYSSQATMP TSAGNSGQEN PKRKSYCECF ASKVYCSESC SCRGCFNDHS HEETVLSTRN  600
RIESRSPLAF APKVIRTCGP GLEFGEDSNA TPASSCHKRG IERFETKEIE RADRKMKDHP  660
KEEQSEMDKY HALCEIWGVR STENLFTTPS MDSRRAFALF PSECPKSSLT SSTRTSSHLH  720
SPTRTDVLLS PFGSYTQMLL GNEASDMLLQ QGDSSCTASL RIASPNKKRV SPLRTGNTLS  780
PTCRKELGLK SIIPPFPSLT GDANSELQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0D3FLL2	0.0	A0A0D3FLL2_9ORYZ; Uncharacterized protein
STRING	OBART03G27030.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-24	TESMIN/TSO1-like CXC 2