PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G26340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 173aa MW: 19924.1 Da PI: 10.2427 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.3 | 1.5e-14 | 91 | 172 | 15 | 99 |
-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + ++kk+a+ + e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L gD+++F l ++ ++ + v+++r+ OBART03G26340.1 91 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 172 566788888666431....2225555.55*********996655554555.********************99887888888888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 68 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-21 | 69 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-17 | 74 | 171 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 77 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.001 | 78 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-13 | 92 | 172 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN 60 ILTEKVKAIN SETPIYGYVM NNSSIHGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN 120 VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 1e-135 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-135 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-135 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629587.1 | 1e-125 | putative B3 domain-containing protein Os03g0621600 | ||||
Swissprot | Q851V1 | 1e-127 | Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0D3FLD1 | 1e-126 | A0A0D3FLD1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZAN7 | 1e-126 | A0A0D9ZAN7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PDK3 | 1e-125 | I1PDK3_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM03G27210.1 | 1e-127 | (Oryza glumipatula) | ||||
STRING | ORGLA03G0244900.1 | 1e-126 | (Oryza glaberrima) | ||||
STRING | OBART03G26340.1 | 1e-127 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-12 | related to vernalization1 1 |