PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G26320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 919aa MW: 106021 Da PI: 9.8046 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.2 | 9.7e-21 | 24 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f v OBART03G26320.1 24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--EKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 108 56666..445555.6********888655..4459***************..**************************************..99 PP EEE-S CS B3 95 kvfrk 99 k+f+ OBART03G26320.1 109 KIFDP 113 99986 PP | |||||||
2 | B3 | 54.2 | 2.5e-17 | 212 | 295 | 1 | 87 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L++gD+++F+l ++ OBART03G26320.1 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVGDTCLFELLKN 295 77889999999999999**********76555....3455.667*********77666666.89**********************8765 PP | |||||||
3 | B3 | 66.2 | 4.9e-21 | 328 | 409 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le +sg +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ OBART03G26320.1 328 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 409 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
4 | B3 | 40.2 | 6e-13 | 541 | 591 | 34 | 86 |
SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++l+l++ + +sW+v++ ++++ks++ lt+GWk+Fv++n L+ gD ++F+ + OBART03G26320.1 541 QELMLRH-RDKSWKVRFyRFKNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILK 591 5677666.78******9444777766..9**********************655 PP | |||||||
5 | B3 | 57.4 | 2.6e-18 | 625 | 711 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+ +v OBART03G26320.1 625 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 709 5555..44444.57********555666..66789999999********..********************************986555..777 PP EE CS B3 96 vf 97 +f OBART03G26320.1 710 IF 711 77 PP | |||||||
6 | B3 | 47.5 | 3.1e-15 | 835 | 918 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k OBART03G26320.1 835 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 918 56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-24 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-25 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.689 | 21 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.59E-20 | 23 | 112 | No hit | No description |
SMART | SM01019 | 1.3E-13 | 24 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-19 | 24 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-29 | 200 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.93E-22 | 205 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.56E-18 | 210 | 296 | No hit | No description |
SMART | SM01019 | 4.2E-12 | 212 | 302 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-16 | 212 | 296 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 213 | 307 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-25 | 312 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-23 | 314 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.915 | 317 | 410 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.02E-20 | 318 | 408 | No hit | No description |
SMART | SM01019 | 1.4E-11 | 320 | 410 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-18 | 320 | 408 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-17 | 500 | 593 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-15 | 501 | 593 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.92E-10 | 511 | 588 | No hit | No description |
SMART | SM01019 | 1.3E-4 | 512 | 602 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-10 | 540 | 592 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 542 | 602 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-22 | 617 | 716 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.704 | 621 | 714 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-12 | 624 | 714 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.01E-21 | 624 | 711 | No hit | No description |
Pfam | PF02362 | 3.9E-16 | 624 | 711 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-21 | 634 | 722 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 817 | 916 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-18 | 818 | 916 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 824 | 919 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.88E-13 | 826 | 917 | No hit | No description |
SMART | SM01019 | 5.6E-8 | 827 | 919 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 834 | 918 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN 60 GNTCSVLVEK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA 120 SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS 180 SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP 240 GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQVGDTCLF ELLKNENPCG 300 QKMRKLNTRS TARDDQEKYF FKVMIGDFHK RMTIPDKFAR HFKGVISKTI KLEPRSGYTF 360 DVQVTKKLNI LVLGSGWESF VNAHDLNMGD FLVFKYNGDF LLQVLIFDPS GCEKSTSCSM 420 ENAIDHVGQG WKEHNDISTS YHDQPKGNKH WMQKDSSSKG NKIGNTRSSN TPSKFSGCIL 480 PRGTCLPVVQ EKKMKEKIQA IHSKTPMYGN VMTKCNVSGS PCVLEITQLY DDAYLPFNNG 540 QELMLRHRDK SWKVRFYRFK NKSRKLTQGW KRFVHDNYLR MGDLCLFEIL KNKYTMNMRR 600 PGARCREGHA HFNGNHIDGQ YKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTIKLQLRD 660 GCTYDVQVTK NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISKLKVLI FGPSGCEKVH 720 SRPTLKNATH CGEKWEEPLH ISSNSHDLPV KSPQNVSKSE KQWDSSEQEN DTANIEEVAL 780 QGDDLQGHPV LNCILPKHTR LTDMQKQQLE SKVGAIHSEI PIYGCILRKS RVHGKSQTVD 840 ICREYADVYL PFKELNMTLQ RHGKNWEVLC RTKDTRTKRL STGWSRFAQE NNLQVGDICL 900 FELLKKKEYS MNVHIIPKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 0.0 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880059.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0D3FLC9 | 0.0 | A0A0D3FLC9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G26320.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-26 | B3 family protein |