PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G24690.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 500aa    MW: 53864.2 Da    PI: 3.9551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G24690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.73.6e-2671451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      l pG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+ +    d e
  OBART03G24690.1   7 LLPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAEARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 
                      579***************************999**************743.456789*******************555599**9665522222 PP

              NAM  92 vlsk..........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                                    +  +     ++ k +L f+ ++ ++g ++ Wvmhey++
  OBART03G24690.1 100 R--LvvpgddggggG--DegleiTWRKYVLSFF-AEGERG-SSGWVMHEYAV 145
                      2..133456666550..155565899999****.444454.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-324164IPR003441NAC domain
PROSITE profilePS5100529.0677164IPR003441NAC domain
PfamPF023654.1E-169144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAGADGLLPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG  60
DEAFFFAEAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDDGGG GGDEGLEITW  120
RKYVLSFFAE GERGSSGWVM HEYAVTSPAD LASSQLRLYR VRFSGHGKKR KREPQCLDSH  180
DDDDDGGDQE SATHRRAVAE TTLFDGYVPR PAADGTDQGT YGVIDGESSL ASHCLPDQIV  240
PPAEVDATAG VENPLLDEER WSPPQPALVK QNSYDLMAIS SLLFSDLPDR IDDDDLSVSQ  300
TEGTELSEQG SSGVIGDDYW RVFHGLSDLI ALPEVEADAT GGAETEKISL LDEERRPPPQ  360
PAPPTAALVP PLQGQSSYDL MADSSLLFAD LPGSIDDDEL QRSLRASDMP DQFLAQTEEA  420
GAGGGGGAAA ALNKQSNSSP LGVEVPMALS DLESPESMPL SDLEFPESID EVLSYIAFTT  480
DDTSCLDFDM DELFSDMPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankJN9823140.0JN982314.1 Oryza sativa Japonica Group NAC transcription factor 69 (NAC69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLA0A0D3FKW30.0A0A0D3FKW3_9ORYZ; Uncharacterized protein
STRINGOBART03G24690.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.16e-14NAC domain containing protein 94