PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G24670.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 464aa    MW: 49705.7 Da    PI: 3.9634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G24670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.68.2e-2271241128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                      lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+   + +++ +e +fF+ ++ k+ +gkr++r +   g+W+ +    + +
  OBART03G24670.1   7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTPL-ADHTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQRMPGDHV 99 
                      79****************************999************953.33456789*******************555599***888766666 PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +       + + L   +g++    ++ Wvmhey++
  OBART03G24670.1 100 A-----QVCAELLR--QGEQ---GSSGWVMHEYAV 124
                      5.....34445443..2333...3699******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-264142IPR003441NAC domain
PROSITE profilePS5100521.4157143IPR003441NAC domain
PfamPF023654.8E-148123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTPLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMPGDHVA QVCAELLRQG EQGSSGWVMH  120
EYAVTSSADL ASSPLRLYRV QKRKREPQCL DSHDDEDGGD QERAAPRRGV ALPAADGTDQ  180
GSYGVIDGEP SLVSHCLPDQ IVPPAEEADA TAGAVDEERW SPPQPASRTA ALVKQNSYNL  240
MAISSLLFSD LPDRIDDDDL SVSQTEGTEL SEQGSSGVIG DDYWRVFHGL SDLIALPEVE  300
ADATGGAETE KISLLDEERR PPPQPAPPTA ALVPPLQGQS SYDLMADSSL LFADLPGSID  360
DDELQRSLRA SDMPDQFLAQ TEEAGAGGGG GAAAALNKQS NSSPLGVEVP MALSDLESPE  420
SMPLSDLEFP ESIDEVLSYI AFTTDDTSCL DFDMDELFSD MPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLA0A0D3FKW10.0A0A0D3FKW1_9ORYZ; Uncharacterized protein
STRINGOBART03G24670.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-13NAC domain containing protein 41