PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G15820.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 328aa MW: 33259.1 Da PI: 8.3203

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G15820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.6	2.9e-15	40	100	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ OBART03G15820.1 40 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 100 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.8	1.3e-34	39	102	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q OBART03G15820.1 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 102 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.11E-14	36	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.256	36	101	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	38	105	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-13	40	100	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	40	107	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEGSSNSPDR QSSGGSPPEE RGGGGSGGGG GRSAAGEPVR SRWTPKPEQI LILESIFNSG 60 MVNPPKDETV RIRKLLERFG AVGDANVFYW FQNRRSRSRR RQRQMQAAAA AAAAAASSSS 120 PSANTSPAAA SAATVQVGLP PGAVVHTMAM GGSACQYEQQ ASSSSSSGST GGSSLGLFAH 180 GAGASGAGGY LQASCGASAS ASSALAPGLM GDVVDSGGSD DLFAISRQMG FVGSPRCSPA 240 SSPATPSSAA TAAQQQFYSC QLPAATITVF INGVPMEMPR GPIDLRAMFG QDVMLVHSTG 300 ALLPVNDYGI LMQSLQIGES YFLVARPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	31	RGGGGSGGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063262	0.0	AK063262.1 Oryza sativa Japonica Group cDNA clone:001-113-A08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629006.1	0.0	WUSCHEL-related homeobox 6 isoform X2
Swissprot	A2XG77	0.0	WOX6_ORYSI; WUSCHEL-related homeobox 6
Swissprot	Q10M29	0.0	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A0D3FHY9	0.0	A0A0D3FHY9_9ORYZ; Uncharacterized protein
STRING	OBART03G15820.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	9e-32	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]