PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G08090.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 230aa    MW: 26088.3 Da    PI: 8.476
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G08090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.5e-1323901178
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
               B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
                     +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g 
  OBART03G08090.1 23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLQSGS 90
                     455669**********999999999***************77999999*****************996 PP
2B348.41.7e-151312031487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  OBART03G08090.1 131 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 203
                      56889********988554..4555.5599*******9876667777*************************6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.87E-131389No hitNo description
PROSITE profilePS508639.79813117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-111389IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-131490IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00451598IPR003340B3 DNA binding domain
PfamPF023628.4E-112391IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-24114225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16115206IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-5116225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351118225IPR003340B3 DNA binding domain
PfamPF023622.4E-13132203IPR003340B3 DNA binding domain
CDDcd100176.03E-11133199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV  60
KVFDDDVSGD VYLGRGWQEF ARAHDLQSGS SSSSDSSDAA AAAAAEGVGD VALSQFAVTL  120
RQCNLEDKQA QYLNVPMEFQ EAHEYARREK VVLRMRGEAW TVRLKHSRRE RGQRTAFRYG  180
WHRFCVDNGL AVGDTCFFRV LREGDLRRGG AADDHVLKVA VRKADGTTLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-143B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-144Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0D3FFC81e-167A0A0D3FFC8_9ORYZ; Uncharacterized protein
STRINGOBART03G08090.11e-167(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]