PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G05550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 314aa    MW: 33448.4 Da    PI: 7.721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G05550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-202776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  OBART03G05550.1 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                     69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-262686No hitNo description
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
PfamPF008476.8E-142776IPR001471AP2/ERF domain
SMARTSM003801.8E-362790IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-302785IPR001471AP2/ERF domain
PRINTSPR003673.1E-102839IPR001471AP2/ERF domain
PRINTSPR003673.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRAAS AAAAHQRLRW LPASAAAAAA GGRRRRPRLR  120
PPQPQRAAQR PRHTPEAAGA QELVVVADQA AAAYADARQP ASAASPHLVT LLHRHQQRRL  180
RGSASAHVAL EQAMAATAAM ESAPCDDDAA VVGFGADKPQ LDLKEFLQQI GVLKADDDGA  240
TGKNGAVHGD DGELADAFGF GGSGEFDWDA LAADMSDIAG GHGGALGANG GFQMDDLHEV  300
EQFGGCMPIP IWDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162890668ATERF1
3gcc_A2e-162890668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118GRRRRPRL
2113120RRRPRLRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0904840.0AC090484.4 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879844.11e-139dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-140DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0D3FEH50.0A0A0D3FEH5_9ORYZ; Uncharacterized protein
STRINGOBART03G05550.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.16e-34ERF family protein