PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G04060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 373aa MW: 40176.8 Da PI: 6.2526 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.3 | 4.5e-27 | 122 | 208 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg OBART03G04060.1 122 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnsilpadpdnpnaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 208 689*******...*****999************************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 6.1E-126 | 1 | 373 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 8.3E-45 | 116 | 213 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.5E-37 | 120 | 208 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.39E-20 | 123 | 209 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 6.9E-25 | 123 | 208 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 4.10E-36 | 213 | 310 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 2.4E-72 | 215 | 371 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.7E-35 | 215 | 327 | No hit | No description |
Pfam | PF08781 | 6.2E-35 | 216 | 344 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MVSGVAHRPD DDGGRAASTF QRPPQPAGAR PSLATPPPSG GAQSASTSGG SAGSPSSRSE 60 QHVPAAAGMA AGAAAASTPI SENTFLRLND LDIHGDDAPS SQAPTSKKKK RGARAVGPDK 120 GGRGLRQFSM KVCEKVESKG RTTYNEVADE LVAEFADPNN SILPADPDNP NAQQYDEKNI 180 RRRVYDALNV LMAMEIISKD KKEIQWKGLP RTSINDIEDL QTELVGLKSR IEKKNTYLQE 240 LQDQLIQRNE QLYGSGNIPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL 300 HDDSFVLKAM SSCGEEQIDG IHDLISNGGE SSSMPNIYRQ QVQQPARSTN GTARLPSSPP 360 IPGILKGRVK HEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 5e-35 | 114 | 213 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224589 | 0.0 | AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628001.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-130 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0D3FDX7 | 0.0 | A0A0D3FDX7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G04060.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-127 | Transcription factor DP |