PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G03890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 141aa    MW: 15268.7 Da    PI: 6.7995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G03890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-201364155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ +++g
  OBART03G03890.1 13 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAMKG 64
                     67********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-151364IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-231372IPR016177DNA-binding domain
PROSITE profilePS5103224.211472IPR001471AP2/ERF domain
SMARTSM003804.4E-351478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-321472IPR001471AP2/ERF domain
PRINTSPR003674.7E-121526IPR001471AP2/ERF domain
CDDcd000182.25E-281572No hitNo description
PRINTSPR003674.7E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEDDKSKEGK SSSSYRGVRK RPWGKFAAEI RDPERGGARV WLGTFDTAEE AARAYDRAAF  60
AMKGATAMLN FPGDHHHGAA SRMTSTGSSS SSFTTPPPAN SSTAAGRGGS DRTTDKVELE  120
CLDDKVLEDL LAEANYRDKN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-281572663ATERF1
3gcc_A2e-281572663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057340.0AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence.
GenBankAC1376350.0AC137635.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3393760.0AY339376.1 Oryza sativa (japonica cultivar-group) Ap23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630244.11e-98ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D3FDV71e-98A0A0D3FDV7_9ORYZ; Uncharacterized protein
STRINGOBART03G03890.12e-99(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]