PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G02840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 365aa MW: 39600.7 Da PI: 4.6341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.2e-12 | 144 | 186 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L OBART03G02840.1 144 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 186 79*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.129 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-16 | 142 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.17E-5 | 144 | 191 | No hit | No description |
Pfam | PF00010 | 1.7E-9 | 144 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-16 | 144 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG SAEARGGMDA 60 SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLAPLRDAM 120 VAEEETGGVH PRSKLHGTPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI 180 DYVKELTERI KTLEEEIGAT PEELDLLNTM KDSSSGNNNE MLVRNSTKFD VENRGSGNTR 240 IEICCPANPG VLLSTVSALE VLGLEIEQCV VSCFSDFGMQ ASCLQEDGKR QVVSTDEIKQ 300 TLFRSAGYGG SSGSTSFLNT PESKLKICSS IVSFAFVNRY GSRPCDLSNI GFELNAKVPI 360 VCTLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 152 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060029 | 0.0 | AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629094.1 | 0.0 | transcription factor bHLH93 | ||||
TrEMBL | A0A0D3FDI2 | 0.0 | A0A0D3FDI2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G02840.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-58 | beta HLH protein 93 |