PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G01650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 308aa MW: 33558.9 Da PI: 10.2877 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.7 | 8.7e-32 | 37 | 141 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+kv tpsdv+k++rlv+pk++ae++ ++e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ OBART03G01650.1 37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 130 89****************************55567889*************************************************6658889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++ ++r+ OBART03G01650.1 131 RGRLFIDWRRR 141 999***99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-40 | 30 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-29 | 34 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.45E-26 | 35 | 122 | No hit | No description |
Pfam | PF02362 | 1.3E-28 | 37 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-21 | 37 | 142 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.367 | 37 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE 60 KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV 120 SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA 180 AGARFLLPPS STPIYDHHRR HAHAVGYDAY AAATSRQVLF YRPLPPQQQH HPAVVLESVP 240 VRMTAGHAEP PSAPSKRVRL FGVNLDCANS EQDHAGVVGK TAPPPLPSPP SSSSSSSGKA 300 RCSLNLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-65 | 32 | 144 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-65 | 32 | 144 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210491 | 0.0 | AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628752.1 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q8LMR9 | 0.0 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A0D3FD45 | 0.0 | A0A0D3FD45_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P6Z7 | 0.0 | I1P6Z7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0014300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G01650.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-72 | B3 family protein |
Publications ? help Back to Top | |||
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