PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G38300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 610aa    MW: 67145.5 Da    PI: 5.0118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G38300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-067697426
                     ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                     ++C +f++ G C  GdrC F H 
  OBART02G38300.1 76 VPCYYFQK-GMCVKGDRCAFLHL 97
                     69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5547299IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-57398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-57596IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-47796IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDSAVRPPVD DEEARRRRST DCIYFLASPL TCKKPLDGLV GAPTTPRTSQ QSAPQVSVPA  60
QAPVPNPASG TAKQGVPCYY FQKGMCVKGD RCAFLHLPQA TGSPAPQHTT KVFAPASVPH  120
PQLKNSWTKP NSSAQQNAPP AIFDKPKDSA HNGKTAQKQN LTNRAGHSSG IIHDKKGSYM  180
PLGVTKNYRP PPSTGDDLAE NGVEMGEFVR EPSAGSDVLT GGADDNAEQS LREDRGAYRR  240
TNGEQHIGML RQTHDSYGFE RSHRGSAEKL LSESRFSQRE PMPLTADSSD LRQRLLKQRR  300
LNNPRSGQVS DRHNVYPEDE RHDRHRRRGE EQASHDGVSS SRLRGRIRLP AETTFDRLGL  360
QPEKERDRGP RARLSPPSQT DLRGKLHDRL KAKPNEDVSG NVQSSLSKAN EDAESLNFAG  420
PKSLAELKAK KVAGSLMKSS RSLTGPVRMT SEIVTIKDSS DPVLFDGPKP LNAILKRKRE  480
ADSGNATDFG SKREEHSGGD EEGSQNDFRN IEDDIVGMNT EGNGEEAFQP EDDVVYGDSL  540
SPADDIAAEA ADDASRELEE QQDVETAEEY DYEMDDVNAA EENDYQEYED EDDDLEDDDD  600
FARKVGVMIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626089.10.0zinc finger CCCH domain-containing protein 19 isoform X2
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0D3FCF80.0A0A0D3FCF8_9ORYZ; Uncharacterized protein
STRINGOBART02G38300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]