PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G37080.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 812aa MW: 89988.8 Da PI: 5.0154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G37080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77.6	1.6e-24	647	691	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++h OBART02G37080.1 647 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVDGLTIYH 691 79*****************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11107	2.7E-46	1	211	No hit	No description
Pfam	PF11107	1.8E-18	218	347	No hit	No description
SuperFamily	SSF46689	3.4E-10	644	691	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-21	646	691	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-16	647	690	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-6	649	689	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-18	729	771	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE 60 SASELDAALV QLASSPNFPK GIEDIQSKTL AMARELVVKH FLKTTNAENL GAVLQAVVEM 120 DMDGISASGE CNVCQEYVQS ILDMNLPSLM RTKNARDVGH STSSDEFCEE SLFTGNSQIL 180 LKELQKKLDS RSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IIDKFILWKQ 240 WKAKCLSYLL DERTIRIMSG TNMIFNAPKE QWMGLFEPLK VSADSSQSGI VEVMELCLLG 300 LVARQWNSLI ESIMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ 360 SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAASKDRPTS TMNQLRNGKV 420 PQYLSPAITV VPALSEVTFP SFSEHRPSYI EREQCGSSIN SFDASTPMCM LASNFTSDLY 480 INKSESPNGK LSSESYAIDT SGCDSSLPPT QSLYKGNPSS LRMVYPKVSE QNSWSQEPLP 540 GPFVCPTSVD FFDQQDMTIF DQQIQDNIAA SPSTNLAKQN EWFSSGTSLQ YLESSVSAGS 600 VLKAVDATST TPSNYLHCHA QRNTSNPPNF NEICSGNIAS SNIAPTKPRM RWTPELHERF 660 VDAVNKLGGS EKATPKAVQK VMKVDGLTIY HKYRTVHHRP QLSDGESAKS GQTDEVSSQP 720 LKGMETTCEG LRVQIGLQKQ LHEQLEIQRK LQLQVEEHSK YLAMIIEKQS ESLRQLGALP 780 RSLDAPTQVL DNRETCEGQT GDADSAEQKP EK

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE  60
SASELDAALV QLASSPNFPK GIEDIQSKTL AMARELVVKH FLKTTNAENL GAVLQAVVEM  120
DMDGISASGE CNVCQEYVQS ILDMNLPSLM RTKNARDVGH STSSDEFCEE SLFTGNSQIL  180
LKELQKKLDS RSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IIDKFILWKQ  240
WKAKCLSYLL DERTIRIMSG TNMIFNAPKE QWMGLFEPLK VSADSSQSGI VEVMELCLLG  300
LVARQWNSLI ESIMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ  360
SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAASKDRPTS TMNQLRNGKV  420
PQYLSPAITV VPALSEVTFP SFSEHRPSYI EREQCGSSIN SFDASTPMCM LASNFTSDLY  480
INKSESPNGK LSSESYAIDT SGCDSSLPPT QSLYKGNPSS LRMVYPKVSE QNSWSQEPLP  540
GPFVCPTSVD FFDQQDMTIF DQQIQDNIAA SPSTNLAKQN EWFSSGTSLQ YLESSVSAGS  600
VLKAVDATST TPSNYLHCHA QRNTSNPPNF NEICSGNIAS SNIAPTKPRM RWTPELHERF  660
VDAVNKLGGS EKATPKAVQK VMKVDGLTIY HKYRTVHHRP QLSDGESAKS GQTDEVSSQP  720
LKGMETTCEG LRVQIGLQKQ LHEQLEIQRK LQLQVEEHSK YLAMIIEKQS ESLRQLGALP  780
RSLDAPTQVL DNRETCEGQT GDADSAEQKP EK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	647	699	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066382	0.0	AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627299.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627301.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627302.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878774.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878775.1	0.0	uncharacterized protein LOC4331121
TrEMBL	A0A0D3FBZ6	0.0	A0A0D3FBZ6_9ORYZ; Uncharacterized protein
STRING	OBART02G37080.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5494	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	3e-41	phosphate starvation response 1