PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G35840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 378aa    MW: 38771.2 Da    PI: 5.0443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G35840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-091662051155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OBART02G35840.1 166 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 205
                      6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.668155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-13165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-8165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6166205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.83E-10167209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MQPNARQMHG GGGGGGGQDD FFDQMLSTLP AVWSELGSGK PAWDLTAGAV GGGGGASDDH  60
SAAAFDDSAL LASRLRQHQI DGGGDKPIML QLSDLHRHHG LAAGDDSGGA AGFLPLSLFA  120
DRSQDDIDAA FKSPNGARGD HALYNGFGAA GMHGAAAMQP PPFGQLRRER IAERMKALQE  180
LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAS AVAPLVANMS SESNGNGNAT  240
SSSGNGEAAN GSSNGDNNRG GTLRVTEQQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA  300
ISSATSSSLL PRTGGGAGGS LHEGGNGTSP PLVNGAATGC DDSGVFFSVK FVVELSFLLL  360
NEDCRGKEES KLLVQKGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040940.0AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688756.11e-149PREDICTED: transcription factor bHLH66-like
TrEMBLA0A0D3FBK60.0A0A0D3FBK6_9ORYZ; Uncharacterized protein
STRINGOBART02G35840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-45LJRHL1-like 3