PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G35180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 521aa    MW: 55164.9 Da    PI: 7.9382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G35180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-15170218148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  OBART02G35180.1 170 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 218
                      79*********************************************97 PP

2Myb_DNA-binding38.23.3e-12225267246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eE+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  OBART02G35180.1 225 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 267
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.093165218IPR017930Myb domain
SuperFamilySSF466891.0E-25167265IPR009057Homeodomain-like
SMARTSM007173.7E-12169220IPR001005SANT/Myb domain
PfamPF002491.4E-14170218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23171225IPR009057Homeodomain-like
CDDcd001676.99E-9172218No hitNo description
PROSITE profilePS5129421.924219273IPR017930Myb domain
SMARTSM007172.9E-10223271IPR001005SANT/Myb domain
PfamPF002497.2E-11225267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-22226273IPR009057Homeodomain-like
CDDcd001671.05E-6227267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAAVAARDDD LGNDDLDDDR SNPRRRSGGC TAAPIRQGLH GGIGLQMTAA MAGDDANDGG  60
HGWRRWLSTA AVAAVVTTTK QPRGYGGARQ GCYPSTKPTI KPARPATTPD APAHRCCQTR  120
HHHHQQQQQQ LATHRCRHDD DDRAEQQEIK NSKELVMGRA PCCDKASVKK GPWSPEEDAK  180
LKAYIEENGT GGNWIALPQK IGLKRCGKSC RLRWLNYLRP NIKHGDFTEE EEHIICSLYI  240
SIGSRWSIIA AQLPGRTDND IKNYWNTKLK KKLLGKRAPS RRARANQDHC GLAGGAAAAM  300
CGGVGTAAAA AAPHQALSSS ALERIQLHMR LQGLYNSAFG CTTTTSNGGG VGVAPPQWPK  360
LEALLPSRPL PAVQPTDAVV ATVQHPHHLV VGGHTLATAA ATTSEAFQAA EHLDPAAATG  420
SNYMPGVAGV EMTSSSSMAG GGGFVAGYGL HDELYDFLFK CESIGGAQGG IIPSSLPELQ  480
CPDGSAIIGA DEKFSTWTSS SCDYGSGGAG DYVLGTHYLA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-241702737108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040570.0AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624187.10.0uncharacterized protein LOC4330950
SwissprotQ9FKL22e-83MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0D3FBD10.0A0A0D3FBD1_9ORYZ; Uncharacterized protein
STRINGOBART02G35180.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-78myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]