PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G34550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 397aa MW: 43473.4 Da PI: 8.0384 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 9.7e-25 | 90 | 133 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e OBART02G34550.1 90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133 79***************************************998 PP | |||||||
2 | QLQ | 59.6 | 9e-21 | 18 | 53 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++ OBART02G34550.1 18 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 53 9********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.4E-15 | 18 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.801 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 90 | 134 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 91 | 133 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA 60 LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH 120 MHRGKNRSRK PVEMSLATPP PPPSSSATSA ASNTSAGVAP TTTTTSSPAP SYSRPAPHDA 180 APYQALYGGP YAAATARTPA AAAYHAQMSP FHLHLDTTHP HPPPSYYSMD HKEYAYGHAT 240 KEVHGEHAFF SDGTEREHHH AAAGHGQWQF KQLGMEPKQS TTPLFPGAGY GHTAASPYAI 300 DLSKEDDDEK ERRQQQQQQQ QHCFLLGADL RLEKPAGHDH AAAAQKPLRH FFDEWPHEKN 360 SKGSWMGLEG ETQLSMSIPM AANDLPITTT SRYHNGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000269|PubMed:15295073}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3) and submergence. {ECO:0000269|PubMed:10712532, ECO:0000269|PubMed:15295073}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF201895 | 0.0 | AF201895.1 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624121.1 | 0.0 | growth-regulating factor 1 | ||||
Swissprot | A2XA73 | 0.0 | GRF1_ORYSI; Growth-regulating factor 1 | ||||
TrEMBL | A0A0D3FB53 | 0.0 | A0A0D3FB53_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G34550.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-51 | growth-regulating factor 5 |