PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G33690.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 25825.9 Da    PI: 7.4288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G33690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20120170155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+tae+Aa+a++ a+++++g
  OBART02G33690.1 120 SRYRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDVAALEFRG 170
                      79********.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-13120170IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-23120180IPR016177DNA-binding domain
CDDcd000185.65E-31120180No hitNo description
SMARTSM003805.2E-37121184IPR001471AP2/ERF domain
PROSITE profilePS5103226.055121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-32121179IPR001471AP2/ERF domain
PRINTSPR003673.5E-11122133IPR001471AP2/ERF domain
PRINTSPR003673.5E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVPRVERGGG GFHLPNSERE DSLFIRALIS VVSGDTTVPT LLPEPTMATV VAGAATCARC  60
GVDGCIGVDC EVVVLAAAAG SSSSDEEDEG ECTTGAVASG GVTGGVGKRR PRRRSGGEGS  120
RYRGVRRRPW GKWAAEIRDP RRAVRKWLGT FDTAEDAARA YDVAALEFRG QRAKLNFPAS  180
TAAQQPRPLL HHNLRENCGS NASSPVHAPE HARTAAAAKD QEIWDGLREI MMLDDGSFWS  240
MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-22116178972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-174ethylene-responsive transcription factor ERF109
TrEMBLA0A0D3FAV91e-175A0A0D3FAV9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YYK91e-175A0A0D9YYK9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GCB91e-175A0A0E0GCB9_ORYNI; Uncharacterized protein
TrEMBLI1P4K71e-175I1P4K7_ORYGL; Uncharacterized protein
STRINGOGLUM02G34120.11e-175(Oryza glumipatula)
STRINGONIVA02G33420.11e-175(Oryza nivara)
STRINGORGLA02G0291300.11e-175(Oryza glaberrima)
STRINGOBART02G33690.11e-175(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-16ERF family protein