PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G33670.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1259aa    MW: 142960 Da    PI: 8.0112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G33670.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-18110211533384
                       -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84  
                       ++ l +ed +g++W++++ y+++s++yvltkGW++Fv+++gL++ D++ F++
  OBART02G33670.2 1102 GVLLNFEDGEGKVWRFRYLYWNNSQSYVLTKGWSRFVREKGLRASDTIAFSR 1153
                       67899*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF032546.4E-18015478IPR004938Xyloglucan fucosyltransferase
PfamPF032548.9E-1945881040IPR004938Xyloglucan fucosyltransferase
SMARTSM010197.4E-610631167IPR003340B3 DNA binding domain
SuperFamilySSF1019364.84E-1710991171IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2011001175IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1511011154IPR003340B3 DNA binding domain
PROSITE profilePS5086311.16611051169IPR003340B3 DNA binding domain
CDDcd100175.75E-1311071153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009969Biological Processxyloglucan biosynthetic process
GO:0036065Biological Processfucosylation
GO:0042546Biological Processcell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0005794Cellular ComponentGolgi apparatus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0008107Molecular Functiongalactoside 2-alpha-L-fucosyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1259 aa     Download sequence    Send to blast
MYYVKFQLHR AAAAASPSHG APEDTPETST RHDDDRLLGG LLSPAFDEHS CRSRYTSSLY  60
RRRSPFRPST YLVERLRRYE ARHKRCGPGS ALFQEAVEHL RSGRNAARSE CQYVVWTPFN  120
GLGNRMLALA STFLYALLTD RVLLVHAPPE FDGLFCEPFP GSSWTLPADF LITDFDGVFT  180
MWSPTSYKNM RQAGTISNAT AEQSLPAYVF LDLIQSFTDA AFCDDDQQVL AKFNWMVIKS  240
DVYFAAMLFL MPAYERELTQ LFPEKEAVFH HLARYLFHPS NDVWGIVHRF YEAYLSRADE  300
LVGLQVRVFP EMPIPFDNMY EQIIRCSEQE GLLPKLGQTV VVTAANGSSV VAPSTKLTSI  360
LVTSLFPDYY DRIRGVYHAR PTETGEYVAV HQPSHEREQR TEARGHNQRA LAEIYLLSFC  420
DRVVTSAVST FGYIAHGLAG VRPWVLLRPP SPVARAEPAC VRSETVEPCL QALPRRMCGA  480
AEGSDIGALV PHIRHCEDVQ KGVKLGWPPA GRAAENEARR WGRLRRASAR AALVLCSLTM  540
IPVVVVLHRC AVSSSWPDRV FEAKHIAGAG EQDMQDDLPD DLTASQYIGY DKFLGGLLQE  600
GFDEVSCRSR YQFARYHKNF TRIPSSYLLE RLRRQEALQK KCGPGTKSYK QAVKLLRSSQ  660
GVNMTTDCNY LFLTVHAGLG NRMLEIASAF LYALLTNRIL LLDRYQEIGD LFCEPFPGTS  720
WLMPSDFPLN YGEFTQSSPE SYGNMLQNKV VGDNTDRSLA GSRPPYVFLY LDGNYEFHDK  780
LFFCEDDQQF LQDVPWLIMR TDMYFIPSLF LIPSYQDELS RLFPEKDAVF HHLARYLFHP  840
TNSIWYSVKG YYRSYLAKAN KTVGIQIRIF EKEGILQKNG RFPYVLEQIL SCAQNEKLLP  900
EISMKDEAEA PTATKNNQTI AVLTTSLSSW YSNQIQKKYS EHPTVDGTRV EVYQPSHEEY  960
QRSKNKKHNM KALAEIYLLS MTDVLITSGF STFGYAAQGL SGLTPWIMFR SENHAMPDPP  1020
CRRAMSIEPC FHQAPFYDCK AKRNADLGKM VPFVRHCEDV SWGLKVITEE QNSTRGEALP  1080
AAVEELRRLR HRRRGHLQLC KGVLLNFEDG EGKVWRFRYL YWNNSQSYVL TKGWSRFVRE  1140
KGLRASDTIA FSRLAYGPDK LLFIDCKRHT EAATGDEKPI TSGEAARVNN TAAATGDEKP  1200
ITSGEATRVV RLFGMDIATG GGDYRKWERA VEMGQEAFLM KRQCVHSAPH YTVRSAKAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5koe_A1e-1713010678476Galactoside 2-alpha-L-fucosyltransferase
5koe_B1e-1713010678476Galactoside 2-alpha-L-fucosyltransferase
5koe_C1e-1713010678476Galactoside 2-alpha-L-fucosyltransferase
5koe_D1e-1713010678476Galactoside 2-alpha-L-fucosyltransferase
5kop_A1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kop_B1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kop_C1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kop_D1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kor_A1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kor_B1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kor_C1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kor_D1e-17130106753521Galactoside 2-alpha-L-fucosyltransferase
5kwk_A1e-1713010678476Galactoside 2-alpha-L-fucosyltransferase
5kwk_B1e-1713010678476Galactoside 2-alpha-L-fucosyltransferase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009770.0AK100977.1 Oryza sativa Japonica Group cDNA clone:J023143L21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878703.10.0uncharacterized protein LOC4330824 isoform X2
TrEMBLA0A0D3FAV50.0A0A0D3FAV5_9ORYZ; Uncharacterized protein
STRINGOBART02G33670.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-25related to ABI3/VP1 1