PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G33670.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1288aa    MW: 146133 Da    PI: 8.058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G33670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.8e-18113111823384
                       -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84  
                       ++ l +ed +g++W++++ y+++s++yvltkGW++Fv+++gL++ D++ F++
  OBART02G33670.1 1131 GVLLNFEDGEGKVWRFRYLYWNNSQSYVLTKGWSRFVREKGLRASDTIAFSR 1182
                       66899*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF032546.7E-18015478IPR004938Xyloglucan fucosyltransferase
PfamPF032541.3E-1936181069IPR004938Xyloglucan fucosyltransferase
SMARTSM010197.4E-610921196IPR003340B3 DNA binding domain
SuperFamilySSF1019364.97E-1711281200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-2011291204IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1511301183IPR003340B3 DNA binding domain
PROSITE profilePS5086311.16611341198IPR003340B3 DNA binding domain
CDDcd100175.92E-1311361182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009969Biological Processxyloglucan biosynthetic process
GO:0036065Biological Processfucosylation
GO:0042546Biological Processcell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0005794Cellular ComponentGolgi apparatus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0008107Molecular Functiongalactoside 2-alpha-L-fucosyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1288 aa     Download sequence    Send to blast
MYYVKFQLHR AAAAASPSHG APEDTPETST RHDDDRLLGG LLSPAFDEHS CRSRYTSSLY  60
RRRSPFRPST YLVERLRRYE ARHKRCGPGS ALFQEAVEHL RSGRNAARSE CQYVVWTPFN  120
GLGNRMLALA STFLYALLTD RVLLVHAPPE FDGLFCEPFP GSSWTLPADF LITDFDGVFT  180
MWSPTSYKNM RQAGTISNAT AEQSLPAYVF LDLIQSFTDA AFCDDDQQVL AKFNWMVIKS  240
DVYFAAMLFL MPAYERELTQ LFPEKEAVFH HLARYLFHPS NDVWGIVHRF YEAYLSRADE  300
LVGLQVRVFP EMPIPFDNMY EQIIRCSEQE GLLPKLGQTV VVTAANGSSV VAPSTKLTSI  360
LVTSLFPDYY DRIRGVYHAR PTETGEYVAV HQPSHEREQR TEARGHNQRA LAEIYLLSFC  420
DRVVTSAVST FGYIAHGLAG VRPWVLLRPP SPVARAEPAC VRSETVEPCL QALPRRMCGA  480
AEGSDIGALV PHIRHCEDVQ KGVKLGWPPA GRAAENEARR WGRLRRASAR AALVLCSLTM  540
IPVVVVLHRC AVSSSWPDRV FEAKHIAGAG EQVSVVQRTV TLSVKLFGVM FYCNDIPLSS  600
SDMQDDLPDD LTASQYIGYD KFLGGLLQEG FDEVSCRSRY QFARYHKNFT RIPSSYLLER  660
LRRQEALQKK CGPGTKSYKQ AVKLLRSSQG VNMTTDCNYL FLTVHAGLGN RMLEIASAFL  720
YALLTNRILL LDRYQEIGDL FCEPFPGTSW LMPSDFPLNY GEFTQSSPES YGNMLQNKVV  780
GDNTDRSLAG SRPPYVFLYL DGNYEFHDKL FFCEDDQQFL QDVPWLIMRT DMYFIPSLFL  840
IPSYQDELSR LFPEKDAVFH HLARYLFHPT NSIWYSVKGY YRSYLAKANK TVGIQIRIFE  900
KEGILQKNGR FPYVLEQILS CAQNEKLLPE ISMKDEAEAP TATKNNQTIA VLTTSLSSWY  960
SNQIQKKYSE HPTVDGTRVE VYQPSHEEYQ RSKNKKHNMK ALAEIYLLSM TDVLITSGFS  1020
TFGYAAQGLS GLTPWIMFRS ENHAMPDPPC RRAMSIEPCF HQAPFYDCKA KRNADLGKMV  1080
PFVRHCEDVS WGLKVITEEQ NSTRGEALPA AVEELRRLRH RRRGHLQLCK GVLLNFEDGE  1140
GKVWRFRYLY WNNSQSYVLT KGWSRFVREK GLRASDTIAF SRLAYGPDKL LFIDCKRHTE  1200
AATGDEKPIT SGEAARVNNT AAATGDEKPI TSGEATRVVR LFGMDIATGG GDYRKWERAV  1260
EMGQEAFLMK RQCVHSAPHY TVRSAKAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5koe_A1e-1713010968476Galactoside 2-alpha-L-fucosyltransferase
5koe_B1e-1713010968476Galactoside 2-alpha-L-fucosyltransferase
5koe_C1e-1713010968476Galactoside 2-alpha-L-fucosyltransferase
5koe_D1e-1713010968476Galactoside 2-alpha-L-fucosyltransferase
5kop_A1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kop_B1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kop_C1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kop_D1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kor_A1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kor_B1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kor_C1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kor_D1e-17130109653521Galactoside 2-alpha-L-fucosyltransferase
5kwk_A1e-1713010968476Galactoside 2-alpha-L-fucosyltransferase
5kwk_B1e-1713010968476Galactoside 2-alpha-L-fucosyltransferase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048170.0AP004817.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0539D10.
GenBankAP0050020.0AP005002.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0486G03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878703.10.0uncharacterized protein LOC4330824 isoform X2
TrEMBLA0A0D3FAV40.0A0A0D3FAV4_9ORYZ; Uncharacterized protein
STRINGOBART02G33670.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-25related to ABI3/VP1 1