PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G32460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 180aa MW: 20051 Da PI: 11.8186 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 67.2 | 5.5e-21 | 33 | 93 | 5 | 65 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 d+hsk+ T++g+ dRR+Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a a l OBART02G32460.1 33 GDKHSKVVTSRGLHDRRIRLSVPTYIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLHPP 93 59*********************************************98886665555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 23.215 | 32 | 90 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-19 | 34 | 83 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEEVVVGKER KRPRCALVGV GGHGSDVADE PGGDKHSKVV TSRGLHDRRI RLSVPTYIAF 60 YDIQDRLGVN RPSKSIEWLI CAALVARLLL HPPQRRPAPH PRRPSSGRPS EEQARTRKAT 120 VGGVTWEGWG RRGGRRESGC AARKAERIAK LRVWREGWMP RREASTSAAS GGQSWIRKPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-14 | 37 | 80 | 1 | 44 | Putative transcription factor PCF6 |
5zkt_B | 5e-14 | 37 | 80 | 1 | 44 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005733 | 0.0 | AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03. | |||
GenBank | AP005848 | 0.0 | AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619107.1 | 3e-30 | transcription factor PCF8-like | ||||
TrEMBL | A0A0D3FAG8 | 1e-124 | A0A0D3FAG8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G32460.1 | 1e-125 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19965 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 2e-20 | TCP family protein |