PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G32430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 168aa MW: 16029.4 Da PI: 10.5496 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 42.6 | 2.2e-13 | 64 | 94 | 1 | 31 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaar 31 aa+k+++++++hTkv+gR+RR+R++a+caar OBART02G32430.1 64 AAPKRSSTKDRHTKVEGRGRRIRMPALCAAR 94 689**************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.4E-9 | 70 | 94 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGTGPS SAGGNGNNGS GPGGAGGEMQ 60 VRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARQLGLGP VGGGGGGGGG GEGHMGILAA 120 LNAYRTQAAT DAAGQQGGGG GGGGSSQQQH GGGGGGGERH QSISTSDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005733 | 1e-151 | AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03. | |||
GenBank | AP005848 | 1e-151 | AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11. | |||
GenBank | AP014958 | 1e-151 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624016.1 | 5e-45 | transcription factor TCP14 | ||||
TrEMBL | A0A0D3FAG5 | 1e-109 | A0A0D3FAG5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G32430.1 | 1e-110 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-15 | TCP family protein |