PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G31930.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 451aa    MW: 50153.1 Da    PI: 9.3995
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G31930.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP55.69e-1854106158
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 
                      rk+ksL+ll+++f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe++++
  OBART02G31930.2  54 RKQKSLGLLCSNFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGV 106
                      79*****************999************...**..**************986 PP
2E2F_TDP75.74.6e-24209289171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++ln i+k     ++k+++rw g
  OBART02G31930.2 209 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 289
                      79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-1950106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.27E-1153106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-2454151IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.0E-1555106IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.1E-22206290IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-30209289IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-19210289IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.17E-12211289IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MATAAVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG  60
LLCSNFVALY NRDDVESIGL DDAARRLGVE RRRIYDIVNV LESVGVSSFF LRLSWTGFLF  120
FLARFDSDIC FRFICEKILV RKAKNRYSWI GFGGVPMALR ELKMSDDEDE DKMGDADGDT  180
ESEKLSQPVD NPSDNKPGAP RCRLRSDHRK EKSLGLLTQN FVKLFLTMEV DTISLDEAAK  240
LLLGEGHAEN SMRTKVRRLY DIANVLSSLN FIDKIQQADS RKPAFRWLGS AGKPKAENGV  300
TIAVPPPGKT ISNKRAFGTE LTNIDINRSR LDSTIPKKAK LTQSGGEILK NCKLSVQKQL  360
GQGSKGGFVY GPFHPAGARK QELDNGNKGH TDNVQNWESL AASFRPQYQN QALGDLFAHY  420
MEAWKSWYSE FAQGSSMMQQ HFGMPVINQF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A8e-31532813228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626334.10.0E2F transcription factor-like E2FE
TrEMBLA0A0D3FAA40.0A0A0D3FAA4_9ORYZ; Uncharacterized protein
STRINGOBART02G31930.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-96DP-E2F-like 1