PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G30940.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 511aa    MW: 56881.9 Da    PI: 8.7495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G30940.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.00036190207219
                      HHHHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsa 19 
                      r +h++ E+rRR +iN++
  OBART02G30940.3 190 RSKHSATEQRRRTKINDR 207
                      889*************96 PP
2HLH247.2e-082392711955
                      HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  OBART02G30940.3 239 RLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 271
                      5899*******8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-17187206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.87188270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-9190275No hitNo description
SuperFamilySSF474592.22E-9237280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5239271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17239283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRQAS RAFNSKTISY KYMVQEMCSK MQFFMLSFRL  240
EILRELLPHT DQKRDKASFL SEVIEYIRFL QEKVQKYEEA DPERNHEDSK SMPWAKVYYR  300
SCWRNTKNTS QVQGEDLSPS TQDMNNEQYG PKHISAAQPA LFNTQSVTST TTSSSHMATG  360
TPQNLEKNST PSNQPPWLSM STMRQESEPG NKMPNKHEKQ TLHDENHSIS SAYSQGLFNR  420
LTEALKKSGL DPSQANIAVE INLAKRARDN TSDNSKIVCL IIILYLCPDF TSQINEDEEP  480
IQITKRRFDK SSSHHLALGC ICDDWQPRRL P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.10.0transcription factor BIM2
RefseqXP_015627559.10.0transcription factor BIM2
RefseqXP_015627560.10.0transcription factor BIM2
TrEMBLA0A0D3F9Y80.0A0A0D3F9Y8_9ORYZ; Uncharacterized protein
STRINGOBART02G30940.30.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.34e-30bHLH family protein