PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G30740.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 480aa    MW: 52279.3 Da    PI: 5.7811
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G30740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.8e-0777118540
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  OBART02G30740.1  77 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 118
                      7*****************************657888888876 PP
2zf-B_box21.93.6e-07120162541
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  OBART02G30740.1 120 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 162
                      7*****************************.5588889998876 PP
3CCT64.24e-22423466144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  OBART02G30740.1 423 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 466
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.95473120IPR000315B-box-type zinc finger
SMARTSM003362.9E-1273120IPR000315B-box-type zinc finger
CDDcd000211.02E-777120No hitNo description
PROSITE profilePS501199.058116163IPR000315B-box-type zinc finger
CDDcd000219.03E-6120163No hitNo description
SMARTSM003360.24121163IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408423465IPR010402CCT domain
PfamPF062038.8E-17423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLISHPMLSN SSGSFHGLYQ YTYISPTLTK EWKQTHHYPG RIPLNSTVEQ KARKVAVLVA  60
LSASGSAPVL YRTMDALCDF CGEQRSMVYC RSDAASLCLS CDRNVHSANA LSRRHTRTLL  120
CDRCVGQPAA VRCLEENTSL CQNCDWNGHG AASSAAGHKR QTINCYSGCP SSAELSRIWS  180
FSMDIPTVAA EPNCEEGINM MSINDNDVNN HCGAPEDGRL LDIASTALMS DLPTGDKFKP  240
LIGSSSGDGM NLLPLNSDQP AEPVSTTPKA PCVTDKDMFN DGSVYGDFCV DDADLTFENY  300
EELFGTSHVQ TEQLFDDAGI DSYFEMKDVP ADESNEQPKP VQPECSNVAS VDSGMSNPAA  360
RADSSHCIPG RQAISNISLS FSGLTGESSA GDFQDCGVSS MILMGEPPWH PPGPESSSAG  420
GSRDNALTRY KEKKKRRKFD KKIRYASRKA RADVRKRVKG RFVKAGEAYD YDPLSQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432436KKKRR
2432437KKKRRK
3433437KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D3F9W40.0A0A0D3F9W4_9ORYZ; Uncharacterized protein
STRINGOBART02G30740.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.48e-95CONSTANS-like 9