PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G29520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20426.8 Da PI: 8.4647 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.1e-07 | 87 | 134 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WTt + + +a + + + +W +ar +g g++ ++k ++ k+ OBART02G29520.1 87 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 134 7*****************99*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.529 | 83 | 139 | IPR017884 | SANT domain |
SMART | SM00717 | 5.8E-6 | 84 | 137 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.98E-11 | 86 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.54E-4 | 87 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGEGMEVGIS YDLAAENEIT GPMIRPYVPT CCLHKIGPIV PCKKKETSEP RDQLDLILVT 60 FVFADATDVK EPNKPILLPP ARRMSSSWTT KQNKVFERAL AIYDRDTPDR WQNVARAVGG 120 GKSVDDVKRH YEKLIKDVDR IDSTGGHQGS HYNSSNASSS SSSSSNSRGS ANEDQRRRYH 180 NFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-18 | 88 | 143 | 11 | 65 | RADIALIS |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121386 | 1e-166 | AK121386.1 Oryza sativa Japonica Group cDNA clone:J023127K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627086.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_015627089.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878627.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878628.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878629.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878630.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878631.1 | 4e-50 | protein RADIALIS-like 3 isoform X2 | ||||
TrEMBL | A0A0D3F9G8 | 1e-135 | A0A0D3F9G8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G29520.1 | 1e-136 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-22 | RAD-like 6 |