PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G28890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 204aa MW: 22226.6 Da PI: 4.619 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 50.6 | 4.2e-16 | 48 | 77 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OBART02G28890.1 48 GATPKSVLELMDVKDLTLAHVKSHLQMYRT 77 69***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 45 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-5 | 48 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-11 | 49 | 78 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MELFPAHPDL QLQISPPPAT KSMDLGFWKR ALETSTTTTT AAAAASTGAT PKSVLELMDV 60 KDLTLAHVKS HLQMYRTIKT TDHKQPAPPY GQTKTIIEIP DDNLFDINNT SGSESSVQQQ 120 SNLDGNEQGS SMCALRSNNS SSRGAWFHDK SRDATPGDIK SFEDVQSQSP EDDDASDLNS 180 PPFQIPETTV SAMKPNLDFT LGRM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005859 | 4e-78 | AP005859.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1053A04. | |||
GenBank | AP005868 | 4e-78 | AP005868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0666E12. | |||
GenBank | AP014958 | 4e-78 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689061.1 | 2e-99 | PREDICTED: probable transcription factor KAN2 | ||||
TrEMBL | A0A0D3F995 | 1e-149 | A0A0D3F995_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G28890.1 | 1e-150 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9438 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 5e-17 | G2-like family protein |