PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G28630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 35053.6 Da PI: 8.4911 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.3 | 3.1e-14 | 38 | 89 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ OBART02G28630.1 38 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 89 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-17 | 36 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.48E-13 | 36 | 93 | No hit | No description |
PROSITE profile | PS50888 | 15.301 | 37 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-14 | 38 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 38 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 43 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MPPPSATLTS SAPRRQGRRR RRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL 60 RSLMPEPYVQ RGDQASIVGG AIEFVKELEQ QLQSLEAQKR TLLPHHKARC DDATPMHNAS 120 GSNVGAGGCM EPTTTTSNCS SSVTEDAPSA DAPPFAQFFA YPQYVWCHSP RDSTTTTTAA 180 SASASASASS SSPATVAAAL QSEHRSGLAD IEVSLVETHA SVRVMSPRRP GQLLKMIAGL 240 QALRLTVLHL NVTTLDSLVL YTLSVKVEEG CSLTTVDDIA AAVHHVLCIV DAEAAASEHL 300 LAAGQLTTTA TAAAVAKREL ATYMY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 20 | RRQGRRRR |
2 | 14 | 23 | RQGRRRRRRR |
3 | 17 | 24 | RRRRRRRR |
4 | 18 | 24 | RRRRRRR |
5 | 38 | 49 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060695 | 0.0 | AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623756.1 | 0.0 | transcription factor bHLH96 | ||||
TrEMBL | A0A0D3F961 | 0.0 | A0A0D3F961_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G28630.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-61 | bHLH family protein |