PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G28110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 151aa MW: 15837.3 Da PI: 5.0657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 95 | 145 | 1 | 47 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWe 47 f+kv tpsdv+k++rlv+pk++ae++ +e++ l +ed+ g+ W+ OBART02G28110.1 95 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLNFEDRAGKPWR 145 89***************************9555568889***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-19 | 89 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.37E-11 | 92 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-8 | 93 | 145 | No hit | No description |
Pfam | PF02362 | 3.5E-8 | 95 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS 60 GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY 120 FPLDAAANEK GLLLNFEDRA GKPWRGGRRK K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-29 | 90 | 145 | 3 | 58 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-29 | 90 | 145 | 3 | 58 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689086.1 | 3e-48 | PREDICTED: B3 domain-containing protein Os02g0683500 | ||||
Refseq | XP_015689087.1 | 3e-48 | PREDICTED: B3 domain-containing protein Os02g0683500 | ||||
Swissprot | Q6EU30 | 1e-47 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A0D3F8Z1 | 1e-103 | A0A0D3F8Z1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G28110.1 | 1e-104 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 9e-30 | B3 family protein |
Publications ? help Back to Top | |||
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