PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G27590.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 386aa MW: 39023.5 Da PI: 9.6044

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G27590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	81	142	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OBART02G27590.1 81 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 142 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	77	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	83	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MSTIKISHRG PGRGLGLVKP MEEMLMGANP NPNGSSNQPP PPPSSAASAQ RPIAPPAAAA 60 AAGAGAAGAG AGTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT 120 EGGSLRNVPV GGGSRKNKRS SSSVVPSAAA SASTSAAVSG SVPVGLAAKN PKLMHEGAQD 180 LNLAFPHHRG RALQPPEFTA FPSLESSSVC NPGGNLAAAN GAGGRGSVGA FSAMELLRST 240 GCYVPLPQMA PLGMPAEYAA AGFHLGEFRM PPPPQQQQQQ QAQTVLGFSL DTHGAGAGGG 300 SGVFGACSAG LQESAAGRLL FPFEDLKPVV SAAAGDANSG GDHQYDHGKN QGGGGGVIGG 360 HEAPGFWNSS MIGNGSSNGG GGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MSTIKISHRG PGRGLGLVKP MEEMLMGANP NPNGSSNQPP PPPSSAASAQ RPIAPPAAAA  60
AAGAGAAGAG AGTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT  120
EGGSLRNVPV GGGSRKNKRS SSSVVPSAAA SASTSAAVSG SVPVGLAAKN PKLMHEGAQD  180
LNLAFPHHRG RALQPPEFTA FPSLESSSVC NPGGNLAAAN GAGGRGSVGA FSAMELLRST  240
GCYVPLPQMA PLGMPAEYAA AGFHLGEFRM PPPPQQQQQQ QAQTVLGFSL DTHGAGAGGG  300
SGVFGACSAG LQESAAGRLL FPFEDLKPVV SAAAGDANSG GDHQYDHGKN QGGGGGVIGG  360
HEAPGFWNSS MIGNGSSNGG GGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028130	0.0	AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627550.1	0.0	dof zinc finger protein 2 isoform X1
Swissprot	B9F1L8	0.0	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A0D3F8S9	0.0	A0A0D3F8S9_9ORYZ; Uncharacterized protein
STRING	OBART02G27590.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-42	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]