PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART02G26890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 666aa MW: 69045.1 Da PI: 6.1756 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 282.8 | 9.8e-87 | 308 | 665 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L ++A+a ++g+ a+++Larl+++ p g+p+ R a+y+ eAL la+s +++++ t++ +++ +laa+k fs++sP+l+f+++ OBART02G26890.1 308 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFANF 396 7899*************************************************6666553.....444456889******************** PP GRAS 97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ta qa+l+++ g +++H+iDfd++ G+QW+++lq+La R+ p l++T+++s +s++ el+ t+++L++fA+ lg+pfefn++ OBART02G26890.1 397 TATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV--- 487 ************98899**********************99976544599****************************************8... PP GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +l+++++ eL ++ +E++aV+l + + +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a + OBART02G26890.1 488 SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GI 573 9*********888889********9777665...44....556*********************************************888.78 PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +++ + k+Er+l+++++ ++v +++ ++ Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S OBART02G26890.1 574 DADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 662 99*******************988876.....56889********************************************************* PP GRAS 372 aWr 374 +Wr OBART02G26890.1 663 SWR 665 **8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.478 | 280 | 645 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-84 | 308 | 665 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 666 aa Download sequence Send to blast |
MRAALFGAER SGGGGGADST GVAAVSESSA AAAEATKWGA PGEHGGGGGG GGGGGGGGKE 60 DWSSGCELPP IPGTLDVGLV GGEGWDTMLG NAAAAAAGQD QSFLNWIIGA AGDLEQPGPP 120 LLDNAGFGIP AVDPLGFSLD HSLSGVASDL SSSGAHTATG GAGGGKASLG FGLFSPEATS 180 LEQPPPPMLF HEGIDTKPPL LGAQPPGLLN HYHHQPPNPA ATFFMPHPSF PEHNHQSPLQ 240 PPPKRHHSMP DDIYLARNQL PPAAAAAQGL PFSPLHASVP LQLQPSPPPT RGAMKTTAAE 300 AAQQQLLDEL AAAAKATEAG NSVGAREILA RLNQQLPPLG KPFLRSASYL REALLLALAD 360 SHHGVSSVTT PLDVALKLAA YKSFSDLSPV LQFANFTATQ ALLDEIGGTA TSCIHVIDFD 420 LGVGGQWASF LQELAHRRAA GGVTLPLLKL TAFVSTASHH PLELHLTQDN LSQFAADLGI 480 PFEFNAVSLD AFNPGELISS TGDEVVAVSL PVGCSARAPP LPAILRLVKQ LSPKIVVAID 540 HGADRADLSF SQHFLNCFQS CVFLLDSLDA AGIDADSACK IERFLIQPRV HDMVLGRHKV 600 HKAIAWRSVF AAAGFKPVPP SNLAEAQADC LLKRVQVRGF HVEKRGAALT LYWQRGELVS 660 ISSWRC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-25 | 381 | 665 | 80 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627071.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A0D3F8J1 | 0.0 | A0A0D3F8J1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G26890.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00150.1 | 4e-93 | GRAS family protein |