PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G26890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 666aa    MW: 69045.1 Da    PI: 6.1756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G26890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.89.8e-873086653374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f+++
  OBART02G26890.1 308 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFANF 396
                      7899*************************************************6666553.....444456889******************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   
  OBART02G26890.1 397 TATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV--- 487
                      ************98899**********************99976544599****************************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + 
  OBART02G26890.1 488 SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GI 573
                      9*********888889********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l+++++ ++v  +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  OBART02G26890.1 574 DADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 662
                      99*******************988876.....56889********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  OBART02G26890.1 663 SWR 665
                      **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.478280645IPR005202Transcription factor GRAS
PfamPF035143.4E-84308665IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MRAALFGAER SGGGGGADST GVAAVSESSA AAAEATKWGA PGEHGGGGGG GGGGGGGGKE  60
DWSSGCELPP IPGTLDVGLV GGEGWDTMLG NAAAAAAGQD QSFLNWIIGA AGDLEQPGPP  120
LLDNAGFGIP AVDPLGFSLD HSLSGVASDL SSSGAHTATG GAGGGKASLG FGLFSPEATS  180
LEQPPPPMLF HEGIDTKPPL LGAQPPGLLN HYHHQPPNPA ATFFMPHPSF PEHNHQSPLQ  240
PPPKRHHSMP DDIYLARNQL PPAAAAAQGL PFSPLHASVP LQLQPSPPPT RGAMKTTAAE  300
AAQQQLLDEL AAAAKATEAG NSVGAREILA RLNQQLPPLG KPFLRSASYL REALLLALAD  360
SHHGVSSVTT PLDVALKLAA YKSFSDLSPV LQFANFTATQ ALLDEIGGTA TSCIHVIDFD  420
LGVGGQWASF LQELAHRRAA GGVTLPLLKL TAFVSTASHH PLELHLTQDN LSQFAADLGI  480
PFEFNAVSLD AFNPGELISS TGDEVVAVSL PVGCSARAPP LPAILRLVKQ LSPKIVVAID  540
HGADRADLSF SQHFLNCFQS CVFLLDSLDA AGIDADSACK IERFLIQPRV HDMVLGRHKV  600
HKAIAWRSVF AAAGFKPVPP SNLAEAQADC LLKRVQVRGF HVEKRGAALT LYWQRGELVS  660
ISSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2538166580375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLA0A0D3F8J10.0A0A0D3F8J1_9ORYZ; Uncharacterized protein
STRINGOBART02G26890.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-93GRAS family protein