PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G26590.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 372aa    MW: 38167.7 Da    PI: 7.19
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G26590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-18196245255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  OBART02G26590.1 196 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 245
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-4104117IPR001471AP2/ERF domain
PRINTSPR003671.3E-10105116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32196254IPR001471AP2/ERF domain
SMARTSM003805.2E-37196259IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-21196254IPR016177DNA-binding domain
PROSITE profilePS5103222.998196253IPR001471AP2/ERF domain
PfamPF008474.3E-12196245IPR001471AP2/ERF domain
CDDcd000186.68E-29197255No hitNo description
PRINTSPR003671.3E-10219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEAAAIHAPT TTTSSDSGSC VTNGTREKRE ISKHKQLKRK RSTSPAPPPG CGGGQGQEAA  60
VETDADAGAA GRGGGAGEEE SSSCGGAGAG EGERNRGDAG RHPSYRGVRR RSWGKWSLAL  120
ASSQLAHSLS SSNQLHHHHQ STTARGAMDD SSFGSEPTTS SSGGEAPASP PSTASSSSDG  180
AGGKKKRPRK DGHHPTYRGV RMRSWGKWVS EIREPRKKSR IWLGTFATAE MAARAHDVAA  240
LAIKGRAAHL NFPDLAHELP RPATAAPKDV QAAAALAAAA DFPASSANAG ASNNPDGSDD  300
ASAGSSSPPP PPDAADDALF DLPDLLLDLR YGPPSSGLSC ASSWEDEVGL ISGAGAAAAG  360
VFRLEEPLLW EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-161942531272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076620.0AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAK1088300.0AK108830.1 Oryza sativa Japonica Group cDNA clone:002-151-G03, full insert sequence.
GenBankAP0050060.0AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0052890.0AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624298.11e-156ethylene-responsive transcription factor ERF039
TrEMBLA0A0D3F8F20.0A0A0D3F8F2_9ORYZ; Uncharacterized protein
STRINGOBART02G26590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-38ERF family protein