PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G26470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 36345.6 Da PI: 5.7498 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 154 | 205 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+ OBART02G26470.1 154 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 205 8********.***********8876..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 153 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 154 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-38 | 154 | 218 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 154 | 213 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.25 | 154 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-31 | 154 | 213 | No hit | No description |
PRINTS | PR00367 | 2.1E-13 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 194 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MDFSGDIDDL ISLQLLHDQL LGVEADACLP VAVHHDGVAA YTEHQQGFHP AAFLPQQPMT 60 MTPAGYVDMA NDQYLGAHAA AGEAEAVYRA AAAEPVMIRF GGEVSPVSDP RRPPLTISLP 120 PTSHAWAAAE AVHPAALLQA QAAAAAADPN DFRKYRGVRQ RPWGKFAAEI RDPKKRGSRV 180 WLGTYDTAIE AARAYDRAAF RMRGAKAILN FPNEVGSRGA DFLAPPPPPP PPTTSTHGKR 240 KRHETAAADP DVEVIGESSK SVKTETYTSP ASSSLASTTT STVTSSSTSP SPSSEAAACG 300 GGGGELFVPP MPSSWSWDQL EGFFGILSPL SPHPQMGFPE VAVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-28 | 155 | 217 | 6 | 68 | ATERF1 |
3gcc_A | 9e-28 | 155 | 217 | 6 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004676 | 0.0 | AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06. | |||
GenBank | AP005006 | 0.0 | AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624058.1 | 0.0 | ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0D3F8D5 | 0.0 | A0A0D3F8D5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P2R1 | 0.0 | I1P2R1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0226700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART02G26470.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-24 | ethylene responsive element binding factor 5 |