PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G25260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 210aa MW: 21779.6 Da PI: 10.8106 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.4 | 3.1e-35 | 54 | 145 | 8 | 107 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskk 99 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +++ s ss++ ++ +k+ OBART02G25260.1 54 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVsSSAPSTSSHQ----------HTlLGKR 137 5899999***************************************************9999966622222222222..........2212222 PP TCP 100 sqksaasa 107 +++++a+ OBART02G25260.1 138 QRQESAAS 145 22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-31 | 53 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS TAPAEAVAQL VPAPSKKAAG AAGGKDRHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG TGTTPAAFVS 120 SSAPSTSSHQ HTLLGKRQRQ ESAASDAVSV AGAASAFWAA LPAPGRPDAW GFSPLDAQPT 180 YVPMAQAHHH HLNLLAALSG AARRAEEESR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00643 | PBM | Transfer from BGIOSGA008683 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624938.1 | 1e-100 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 3e-39 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0D3F802 | 1e-147 | A0A0D3F802_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G25260.1 | 1e-148 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 7e-28 | TCP family protein |