PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G24860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 599aa    MW: 65221.2 Da    PI: 10.0077
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G24860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18761393499
                      SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l+v+++r+
  OBART02G24860.1  76 ATVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RGDGGDLHVGIRRA 139
                      58999*********************************************..3488999*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.1E-730140IPR003340B3 DNA binding domain
CDDcd100176.43E-1670138No hitNo description
SuperFamilySSF1019363.66E-1773140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-2275141IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-1676139IPR003340B3 DNA binding domain
PROSITE profilePS5086311.36477140IPR003340B3 DNA binding domain
PfamPF065071.5E-33189272IPR010525Auxin response factor
PROSITE profilePS5174514.478513593IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPAGARRA RARPRRAGAL  60
RGARPGARAL PRRVRATVVA KDVHGVAWNF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD  120
SIVFLRGDGG DLHVGIRRAK RGFCGGGGGA EEASLPGWDQ YGGLMRSNAS PCAAAKGRGK  180
VRAEDVVEAA RLASGGQPFE VVYYPRASTP EFCVRAAAVR AAMRVQWCPG MRFKMAFETE  240
DSSRISWFMG TVAGVQVVDP IRWPQSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSSMPA  300
IHLSSFSPPR KKPRIPAYPE FPFEGQLLNP AFPPNPLAHG HHHYHHNHPS FFPFPDVSAP  360
AGIQGARHAQ FGPSLSDLHL THLQSSLMYP GLRRPDHVGP TPIPPPRIST DLTMGSSPPA  420
RALSMGAKKP DDAKPPGLML FGQRILTERQ MSLSGTTSPA ATGNSSLNWN TEKGASEGSG  480
SGVIQNSPTD NTSSERLQWF RENSTVSELG LEPGQCKVFI ESDTVGRNLD LSSLASFEQL  540
YGRLSEMFCI DSAELRSRVL YRGATGEVRH AGDEPFSEFI KLARRLTILT DAGSDNLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-4278293198388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0D3F7V60.0A0A0D3F7V6_9ORYZ; Auxin response factor
STRINGOBART02G24860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-149auxin response factor 16