PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G24560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 27445.6 Da PI: 7.6527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.6 | 3.5e-51 | 10 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deelv++yL+kkv+++++ +++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev OBART02G24560.1 10 LPPGFRFFPSDEELVCHYLHKKVANERIAQGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRG 103 79*************************999889***************87778889************************************99 PP NAM 95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg++ktLvfy+grap+g+kt Wvmhe+rl OBART02G24560.1 104 SssssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 143 86666655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-59 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.874 | 10 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-28 | 11 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MALREIESTL PPGFRFFPSD EELVCHYLHK KVANERIAQG STLVEVDLHA REPWELPEVA 60 KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE VRGSSSSSSS SRAVVGMRKT 120 LVFYQGRAPN GVKTGWVMHE FRLDSPHSQP KEDWVLCRVF QKRGGYYVGS QQLAAGYDSA 180 AGFANPTQPA VPHYQYGGAV IGFPEEFGSG GGVADEYGFG TYLDLGFELD DTASVLGGIR 240 SFPQGWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 5 | 166 | 10 | 172 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006847 | 1e-148 | AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02. | |||
GenBank | AP014958 | 1e-148 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648848.1 | 1e-122 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-61 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D3F7S2 | 0.0 | A0A0D3F7S2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G24560.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-75 | NAC domain containing protein 74 |