PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G23690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 246aa MW: 25950.4 Da PI: 8.0117 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.6 | 1.2e-08 | 31 | 68 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ ++ + ++l+C+ ++ +lC+ C H g H OBART02G23690.1 31 RACDSCGAEAARLYCRADGAFLCARCDARAH-GagsrHA 68 57**************************999.4466675 PP | |||||||
2 | zf-B_box | 23 | 1.7e-07 | 70 | 114 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p OBART02G23690.1 70 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 114 679*****************************6578888888765 PP | |||||||
3 | CCT | 71 | 2.8e-24 | 175 | 218 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++ OBART02G23690.1 175 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 218 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.4E-9 | 28 | 72 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.993 | 28 | 72 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.93E-9 | 31 | 72 | No hit | No description |
Pfam | PF00643 | 1.2E-6 | 32 | 67 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.182 | 68 | 115 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.4E-6 | 70 | 114 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-8 | 73 | 115 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.7E-18 | 175 | 217 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.916 | 175 | 217 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEAAEDKAMV VGVGGAVAAG YSSSSWGLGT RACDSCGAEA ARLYCRADGA FLCARCDARA 60 HGAGSRHARV WLCEVCEHAP AAVTCRADAA ALCAACDADI HSANPLARRH ERLPAIGVPV 120 APPELDLTAG SLFYPEHCMA HSLSSSEVAI VPDALSAGAA APPMVVVVAS KGKEREARLM 180 RYREKRKNRR FDKTIRYASR KAYAETRPRI KGRFAKRTAD ADDDDEAPCS PAFSALAASD 240 GVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058536 | 0.0 | AK058536.1 Oryza sativa Japonica Group cDNA clone:001-017-B01, full insert sequence. | |||
GenBank | AK100097 | 0.0 | AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688663.1 | 2e-89 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q9SK53 | 4e-60 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0D3F7H2 | 1e-174 | A0A0D3F7H2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G23690.1 | 1e-174 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 2e-24 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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