PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G23210.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 25635.9 Da PI: 10.3535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 7.9e-13 | 172 | 217 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq OBART02G23210.2 172 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 217 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.723 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-16 | 169 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-12 | 170 | 221 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 171 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 172 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MMRRGRRAWA SAAGRERGLA GAAQQLAGRI LLQPHGQQRG AEAHHHHHHP SMAGSGSGSS 60 SGGRKMKSQL SFTAGPPHLS HIAEDGAFPD RAGAEASVPR TFSAGGGFSI VGPWEESRDI 120 ISTLGGYESQ FGGMASTSAL EMAGMDRYLQ LQHDQVPFKV RAKRGCATHP RSIAERERRT 180 RISEKLRKLQ ELVPNMDKQT STADMLDLAV EHIKGLQSQL QALKHEQEKC TCCSRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110833 | 0.0 | AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625725.1 | 1e-119 | transcription factor bHLH128 isoform X1 | ||||
Swissprot | Q8H102 | 5e-50 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A0D3F7B4 | 1e-172 | A0A0D3F7B4_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G23210.1 | 1e-153 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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