PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G22620.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 345aa    MW: 35974.6 Da    PI: 7.5896
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G22620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1757107155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  OBART02G22620.1  57 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 107
                      68********.**********83....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1057107IPR001471AP2/ERF domain
CDDcd000186.50E-2857116No hitNo description
Gene3DG3DSA:3.30.730.102.3E-3058115IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2158116IPR016177DNA-binding domain
SMARTSM003801.6E-3458121IPR001471AP2/ERF domain
PROSITE profilePS5103223.18258115IPR001471AP2/ERF domain
PRINTSPR003673.8E-95970IPR001471AP2/ERF domain
PRINTSPR003673.8E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQAQHAMDEP ANAQLYGHAH AHSHHHRSKR PSPGGGGGGA ASLGADGGGG GGSLSGTRYR  60
GVRRRPWGRF AAEIRDPASK ERRWLGTFDT AEQAACAYDV AARAMRGTRA RTNFPVPAAA  120
GFPGGGGGGC WPWVNIPPQG AAAAASHQQP LNTFLLHNLL MSSSPHGCLL LHHAGHGHGH  180
AHSHSHSHSR AHNPSTRPPT SAPPPPPPAA ASSATTAPAT TTGAAATSAP GADDDAWGFL  240
LRREPPEAGL LQDVLHGFYP TRRPHDDAGP APKLERPYEA TSSYRVSSPW GAVEDCDDGD  300
GDGDDDYRGF PMMPQGLLED VIQCPPYMEV LAAPSAAVGR VSRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2055121269ATERF1
3gcc_A4e-2055121269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040230.0AP004023.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1126_D09.
GenBankAP0040790.0AP004079.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1067_B01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624483.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A0D3F7390.0A0A0D3F739_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NH810.0A0A0E0NH81_ORYRU; Uncharacterized protein
TrEMBLI1P1S40.0I1P1S4_ORYGL; Uncharacterized protein
STRINGORUFI02G23860.10.0(Oryza rufipogon)
STRINGORGLA02G0193000.10.0(Oryza glaberrima)
STRINGOBART02G22620.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-12ERF family protein