PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G20160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 686aa    MW: 72534 Da    PI: 10.1713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G20160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.7e-08189233244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  OBART02G20160.1 189 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 233
                      68******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-11183240IPR009057Homeodomain-like
PROSITE profilePS5129410.555183241IPR017930Myb domain
SMARTSM007172.4E-6187239IPR001005SANT/Myb domain
PfamPF002493.3E-6189233IPR001005SANT/Myb domain
SuperFamilySSF466896.43E-13190249IPR009057Homeodomain-like
CDDcd116606.64E-18191238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKKEFPGQAP TSRYQPATIL TMLQEMGKQV GAGKGIDWRA LVRRTSTGIT SAREYQMLWR  60
HLAYGHEFVE SVEPASLPLD DGSDLECEIE IVPAPGNEAL AEATSFAKTI ITGSSREQTS  120
GQRVNSEAAA LNTPNEKIVR VPSDKQLVPG HRLTNGTGPV SSSKQPSHTG SSPDPLDPNG  180
HPKKKKKPKP WSREEDMELG AGVQKHGEGN WMEILHKYKF DSSRTHLQLQ QRWALICKRQ  240
GSTKPATPKI PNVMSEELKA AQKAFSLAIG TTRSSTLRPG GVPHHNPMVT TMTPEVKSVT  300
APSPLPVPVH VVPVPVPVQP VQVQLPPPQL HQAPAQSAPP PPKVSNASNK SRNNSKKQVA  360
QSIPVNGPLS IQEAALAAGG RIAEPSVATN FLKAAQSTKA VHIRSRGTGS SKSSTGSKTP  420
TVAGEPGTQL GSDQHLELQS TGGPSQVLTA HATEQVHNVS EVAGVNPLGQ SAGVHLSETK  480
KALNTTPVSG TSDKMEIDDN SNYFAVTMED LFPEDVKQED VQDPKIEEAI DPKDADMLEF  540
DRFVAQGCLN KDNVDKSKAA KIAPEAQSVI GSQKKQLKTL PTVGKSNPVF AGPPATAKKT  600
KAPIPQGGMS SGIVGVLNRS LGGKAPAPAT TGTQSTVQKQ QSMSSKGNLL VPKNVAPGTV  660
TPANNRANTA VNGASKVNPP ASQKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187PKKKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLA0A0D3F6960.0A0A0D3F696_9ORYZ; Uncharacterized protein
STRINGOBART02G20160.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-36MYB_related family protein