PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G20160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 686aa MW: 72534 Da PI: 10.1713 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.7e-08 | 189 | 233 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W+ eEd l +v+++G g+W I ++ Rt q++ rw OBART02G20160.1 189 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 233 68******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 183 | 240 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.555 | 183 | 241 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-6 | 187 | 239 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-6 | 189 | 233 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.43E-13 | 190 | 249 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.64E-18 | 191 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MKKEFPGQAP TSRYQPATIL TMLQEMGKQV GAGKGIDWRA LVRRTSTGIT SAREYQMLWR 60 HLAYGHEFVE SVEPASLPLD DGSDLECEIE IVPAPGNEAL AEATSFAKTI ITGSSREQTS 120 GQRVNSEAAA LNTPNEKIVR VPSDKQLVPG HRLTNGTGPV SSSKQPSHTG SSPDPLDPNG 180 HPKKKKKPKP WSREEDMELG AGVQKHGEGN WMEILHKYKF DSSRTHLQLQ QRWALICKRQ 240 GSTKPATPKI PNVMSEELKA AQKAFSLAIG TTRSSTLRPG GVPHHNPMVT TMTPEVKSVT 300 APSPLPVPVH VVPVPVPVQP VQVQLPPPQL HQAPAQSAPP PPKVSNASNK SRNNSKKQVA 360 QSIPVNGPLS IQEAALAAGG RIAEPSVATN FLKAAQSTKA VHIRSRGTGS SKSSTGSKTP 420 TVAGEPGTQL GSDQHLELQS TGGPSQVLTA HATEQVHNVS EVAGVNPLGQ SAGVHLSETK 480 KALNTTPVSG TSDKMEIDDN SNYFAVTMED LFPEDVKQED VQDPKIEEAI DPKDADMLEF 540 DRFVAQGCLN KDNVDKSKAA KIAPEAQSVI GSQKKQLKTL PTVGKSNPVF AGPPATAKKT 600 KAPIPQGGMS SGIVGVLNRS LGGKAPAPAT TGTQSTVQKQ QSMSSKGNLL VPKNVAPGTV 660 TPANNRANTA VNGASKVNPP ASQKPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 187 | PKKKKKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068448 | 0.0 | AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627404.1 | 0.0 | uncharacterized protein LOC4329631 | ||||
TrEMBL | A0A0D3F696 | 0.0 | A0A0D3F696_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G20160.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 9e-36 | MYB_related family protein |