PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G19930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 22279.1 Da PI: 11.1567 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 93 | 142 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a++aa+++++g OBART02G19930.1 93 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAALRFRG 142 7********.**********94....36*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-13 | 93 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-23 | 93 | 151 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-35 | 93 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 26.239 | 93 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 93 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 94 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.99E-14 | 101 | 151 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAALFEAAET AAIVAALTRV IADGGRGGGG GVCVQPPAPS LVVPPRAGTG GGRRVDVARE 60 EEMVGVVSAG DHAGEASVAA AGVVVAAPAT ARRYRGVRRR PWGKWAAEIR DPRKAARVWL 120 GTFRTAEDAA RAYDAAALRF RGRRAKLNFP EEVSRPWQGH DVDHMSCSPP SISNARFLGS 180 WTFGPPPPPS RSVAAAATTL LGGSHGGNGA ENGRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-23 | 89 | 154 | 1 | 67 | ATERF1 |
3gcc_A | 7e-23 | 89 | 154 | 1 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 30 | GGRGGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107852 | 0.0 | AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878870.1 | 3e-98 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0D3F674 | 1e-148 | A0A0D3F674_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G19930.1 | 1e-148 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17401 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 5e-19 | related to AP2 6l |