PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G18470.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 270aa    MW: 28299.2 Da    PI: 5.3541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G18470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2086135255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a++ a+++++g
  OBART02G18470.1  86 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAAAAYDDAALRFKG 135
                      7********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3185144IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2286144IPR016177DNA-binding domain
PROSITE profilePS5103225.18586143IPR001471AP2/ERF domain
PfamPF008471.0E-1386135IPR001471AP2/ERF domain
CDDcd000187.53E-1886143No hitNo description
SMARTSM003801.5E-3586149IPR001471AP2/ERF domain
PRINTSPR003672.0E-118798IPR001471AP2/ERF domain
PRINTSPR003672.0E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSSRQPIGSG GGGAPPDWHD VEPQRQPVDD VVTVAAAAAY LAAPAGATLS SESADRRWRP  60
VGPSAAAAAA ALQAVEAQGA AAAERHYRGV RRRPWGKWAA EIRDPNKAAR VWLGTFDTAE  120
AAAAAYDDAA LRFKGSHAVT NFPSDSDTPS AKANQMKLHP RRHTTPDKTP SSSTAAAAKA  180
SVPDPTPAPP EEDRANDSSF NPFASPTSVL RYAAADEVTA PSFEHLLVEL GDLSAPPPST  240
KAAEFDWLPW WEGEDFVTAG LTASNAVSVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2282143163ATERF1
3gcc_A1e-2282143163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241410.0AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106130.0AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637513.11e-105ethylene-responsive transcription factor 3
TrEMBLA0A0D3F5R40.0A0A0D3F5R4_9ORYZ; Uncharacterized protein
STRINGOBART02G18470.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-21related to AP2 6l