PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G15620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 272aa MW: 29846.4 Da PI: 7.8192 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 29 | 132 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+l+psdv+ +lv+p +++ + + ++ + + +++ed +g+ W +++ +k+++ + ltkGW +++++gL++gD+v F ++ OBART02G15620.1 29 FGKALMPSDVSWDtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVTGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFFHS 120 66999*****977699********9999999976666667777888866677*******..******************************976 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 ++++++ +r OBART02G15620.1 121 T-ACGRFFICCRR 132 5.55555666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-17 | 23 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-17 | 27 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.15E-18 | 28 | 132 | No hit | No description |
Pfam | PF02362 | 2.4E-11 | 29 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0023 | 29 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.46 | 30 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KALMPSDVSW DTEQLVIPDE HVGKLLDMVV 60 MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS 120 TACGRFFICC RRTCMSFLPL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD 180 HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS 240 TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-13 | 28 | 122 | 13 | 105 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005608 | 0.0 | AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07. | |||
GenBank | AP005696 | 0.0 | AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624416.1 | 0.0 | putative B3 domain-containing protein Os02g0455900 | ||||
Swissprot | Q6K3B1 | 0.0 | Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900 | ||||
TrEMBL | A0A0D3F4T9 | 0.0 | A0A0D3F4T9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G15620.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18138 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 3e-13 | B3 family protein |