PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G15610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 29306.8 Da PI: 8.3378 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.2e-16 | 29 | 124 | 1 | 93 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k l+psd ++ +l +p ++++++g ++led++g + W +++ +k+ g + ltkGW+ Fv+++gLk+gD++ OBART02G15610.1 29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDTI 112 89*******9988799********9997........888888888888888889999*******..**************************** PP EEEE-SSSEE..E CS B3 81 vFkldgrsefelv 93 F + g+ +++l+ OBART02G15610.1 113 SFFR-GSACGHLF 124 *984.33555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-19 | 24 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-19 | 27 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.54E-19 | 28 | 128 | No hit | No description |
SMART | SM01019 | 1.8E-7 | 29 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-13 | 29 | 126 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.546 | 30 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE 60 DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC 120 GHLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARHVPSL GQARLHDGNQ 180 DGSGAPSRHV PSSGRCVEAQ LSRVSSRRQR CTMKHSIPEP TIETPPILES MFLIAAPPAV 240 KCLRLFGVNI YVLPVSSSGQ PKQESSP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625111.1 | 0.0 | B3 domain-containing protein Os02g0455800 | ||||
Swissprot | Q6K3B2 | 0.0 | Y2558_ORYSJ; B3 domain-containing protein Os02g0455800 | ||||
TrEMBL | A0A0D3F4T8 | 0.0 | A0A0D3F4T8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G15610.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 7e-19 | B3 family protein |