PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G12760.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 575aa MW: 61257.1 Da PI: 7.7358

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G12760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	42.9	1.3e-13	197	286	7	98
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 w+ +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg+ OBART02G12760.1 197 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 286 ************999999954..699*******98865538*******************9965.567889********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.1E-19	197	285	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MEFEPETQQS PEINPPQRPK AHAENPAARI RIRISPASSP PPPQNPSGDR GAASSDEEEE 60 EEDSDTDTYA QGFQLRKVGG GDEEGEEVEG DSSESEPEPE PVKKESAKKA KAEAKKKRAA 120 PEPAPSGKAK KAKPEKSSSA AAPEPAPSSG KSKKAAKAEA AKAAAAEPAP STGKVSKSKL 180 APEPSPSSKS GKALSRWTTD DEVKILEVLV AHFKSHGTQL NVEGIIAAVG DSLERKSIKY 240 SDMYEKVRRL KQRYEATAKK VEHGGDLPAK EDDLRMYQLS SEIWGKNAKD AGNSSKNKKG 300 QAKKDKVSGD SKEAAKEDKV DEAAIAVNEK GGTLAENKKG KTNKQKTGME TKVGLSKEAA 360 LAASPTKGKK KGSHKDKLDE EAKSGTAKVT STTATDDDDD DDGTLGGSKR EKAGKEELDG 420 DTHIVMPKEA TTTAARDDGT LVGSKKGKAD NGKLDGDTHS VMPKEATAGT QNGGILTGGE 480 NHKEKVDKDA NVPSIRREYA ELQSLYPNLA SFVNGIEAQH PCGSTFKRAF EFISDDKACT 540 LESKIKKQKI AEVRMQLRLA DTKKEVANAL LGLLD

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MEFEPETQQS PEINPPQRPK AHAENPAARI RIRISPASSP PPPQNPSGDR GAASSDEEEE  60
EEDSDTDTYA QGFQLRKVGG GDEEGEEVEG DSSESEPEPE PVKKESAKKA KAEAKKKRAA  120
PEPAPSGKAK KAKPEKSSSA AAPEPAPSSG KSKKAAKAEA AKAAAAEPAP STGKVSKSKL  180
APEPSPSSKS GKALSRWTTD DEVKILEVLV AHFKSHGTQL NVEGIIAAVG DSLERKSIKY  240
SDMYEKVRRL KQRYEATAKK VEHGGDLPAK EDDLRMYQLS SEIWGKNAKD AGNSSKNKKG  300
QAKKDKVSGD SKEAAKEDKV DEAAIAVNEK GGTLAENKKG KTNKQKTGME TKVGLSKEAA  360
LAASPTKGKK KGSHKDKLDE EAKSGTAKVT STTATDDDDD DDGTLGGSKR EKAGKEELDG  420
DTHIVMPKEA TTTAARDDGT LVGSKKGKAD NGKLDGDTHS VMPKEATAGT QNGGILTGGE  480
NHKEKVDKDA NVPSIRREYA ELQSLYPNLA SFVNGIEAQH PCGSTFKRAF EFISDDKACT  540
LESKIKKQKI AEVRMQLRLA DTKKEVANAL LGLLD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004168	0.0	AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626761.1	0.0	neurofilament medium polypeptide
TrEMBL	A0A0D3F3T1	0.0	A0A0D3F3T1_9ORYZ; Uncharacterized protein
STRING	OBART02G12760.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37