PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G12640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 207aa MW: 23593.2 Da PI: 10.1174 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 38.3 | 3.6e-12 | 2 | 88 | 10 | 98 |
DUF573 10 eDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg+ OBART02G12640.1 2 DDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEVTTKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 88 7**********999999954..699***********98865538***********************9965.567889**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.3E-17 | 2 | 87 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDDEVKILEV LVAHFKSHGT QLNVEGIIAA VGDSLERKSI KYSDMYEKVR RLKQRYEVTT 60 KKVEHGGDLP AKEDDLRMYQ LSSEIWGKNA KEYVSAPASQ NKGNSSKITR RGRLRKIRWM 120 NATVPSIRRE HVELQSLYPN LASFVKGIEL QHACGSTFKR AFEFISDDKA CTLESKIKKQ 180 KIAEVRMQLR LADTKKEVAN ALLGLLD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 115 | RRGRLRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102886 | 1e-122 | AK102886.1 Oryza sativa Japonica Group cDNA clone:J033112K05, full insert sequence. | |||
GenBank | AP004168 | 1e-122 | AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07. | |||
GenBank | AP014958 | 1e-122 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-122 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571636.1 | 2e-57 | hepatoma-derived growth factor-related protein 2 | ||||
TrEMBL | A0A0D3F3R8 | 1e-151 | A0A0D3F3R8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G12640.1 | 1e-152 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7289 | 27 | 37 |