PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G12540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 867aa    MW: 95793.1 Da    PI: 4.1028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G12540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.36.6e-15101511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.....tk..sgyWkat 86 
                      l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g r++++     t    g W ++
  OBART02G12540.1  10 LSPGFKFNPSVEQLLCFFLLPYLQHRRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGRRQQQvsrtvTGggGGKWIKQ 103
                      579************************9998888888**********834555677799***9999888876554443233333266889*999 PP

              NAM  87 gkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++  ++       +++  +   +L f++ ++++g +t Wvmhe+++
  OBART02G12540.1 104 RTERPRGEEepvvvfgGETFRWEEFSLNFHRDDRRSG-STGWVMHEFAV 151
                      88888777655555544444788899****8777776.9********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-273171IPR003441NAC domain
PROSITE profilePS5100523.32310171IPR003441NAC domain
PfamPF023659.2E-1012150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLQHRRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGRRQQQVSR TVTGGGGGKW IKQRTERPRG EEEPVVVFGG  120
ETFRWEEFSL NFHRDDRRSG STGWVMHEFA VVPPAGSRVA ATHTACRIAF TGHGQKRKRV  180
PDGYVFVDVH VQTAAAAAAV APPLPMLSSY GEPPHEHFSD DHPPPHSYTY YTQEYQQFLP  240
AAEQSDQEQE YCAPEQQNFQ DYHVAAAEQT DQDYFYTEMI NQEQDYAYQQ QDYAYQQQQQ  300
HLFHGDFLAT SQQFLGQDHE VMVTGLGGGL VVSDNGEHAS AAAPATEPPV HDVFLETLVP  360
EPPENAYVDG AGESAMASAS SAGGAPLLEQ PFATPPQQFL DQEPAPAGLN DGGGMIYNNN  420
GDGEHDAAPA AQPPARYYSG PVPAVDSVFL DKMREYLMAD AKGLCRIDAP INNGEHAAAP  480
APAADDPLAA QHGHGDAPPL PVPPDAAELE RVVGHLLREV EDIIKVAAAG GYGGSSDKPL  540
SEFDKAQNQI LAKLMAVFNQ VAEMRSGRQQ LLWRELRTSL GEANLPSMRL GEADPSLPSS  600
GVSDPSLPIS GVVDPPSMGS GSRRNQEEQE YAAYTDQIQQ QCFVPEQQMS NQEYFPEAAA  660
EQSNQQFFVP AEEQSSHQFL PAEEQSNYQQ FLPALEQMTQ SNQEFAYGEQ SQCYXVPEQQ  720
QLSXQEYAYS EQSQCYILPE QQELSNQEAE YAFVCYDEQQ QQQQQSKQEA EYAFACYDEQ  780
QQQQQYLHGD LTSWQEPLVT SSSSSSQQFL GQEQLLPDGL LLDGFGEISQ QQGDQEYAYC  840
EESQCYTMPE QQQQSNQEAE FAFACYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3F3Q60.0A0A0D3F3Q6_9ORYZ; Uncharacterized protein
STRINGOBART02G12540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123