PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G10190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 484aa MW: 52403.8 Da PI: 10.3693 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100 | 1.6e-31 | 57 | 110 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ OBART02G10190.1 57 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 110 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.601 | 53 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-29 | 53 | 111 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-14 | 56 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-22 | 57 | 112 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-9 | 58 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MKEKEVLVEI VEDDELKRSI ESKLKGDKDS GGGRLEGING GEQRVPSVRQ YNRSKLPRLR 60 WTPDLHMAFV HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDHEGRQI 120 RGAIASVFSP MDFHLMRGDR RFHDMLLQRA AALSSSRPEH GGFFSSRSGG GLPPEASRLY 180 GLLQHRQSPA MATMQTFDFK NSSFRNQEWS FSFNHQRKET MNPSSSSSTT AAIRRWPSAA 240 GAVADVAGER QRLAERFGYY TGNGGASSTS LPLITRAAMA APPPMFAAAV APPGRDHHRL 300 PFGWHAGGGG GGGGGGGGNK NRSSSDPVVI DEALDSRRLE HQQKHVEQPR TTPTTTTTPA 360 GKRPPEWSPP DLQLTLSPTT APAADGGGAK RSKTSTTTTN TTAAISGEQE AEKNMDRCKN 420 KLSISLSLSP PAAAAAAANF SSMDLSMEQQ KQKQEKTTIG SSEEEAGDLG QSTLDLTMSI 480 RALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-18 | 58 | 110 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 58 | 110 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 58 | 110 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 58 | 110 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 58 | 110 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005613 | 0.0 | AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625548.1 | 0.0 | uncharacterized protein LOC107275964 | ||||
TrEMBL | A0A0D3F2Y1 | 0.0 | A0A0D3F2Y1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G10190.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 5e-35 | G2-like family protein |